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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAAgtatgaaacttttctacttgcatttactgcaactccagtccgctatttatccatctattttctcaatgttttcttctttcataagcatcaattcagttga...

Basic information

species Arabidopsis thaliana
transcript AT2G31060.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 13
AGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAAgtatgaaacttttctacttgcattta--ctgcaactccagtccgctatttatccatctattttctcaatgttttcttctttcataagcatcaattca-gttga-
 || ||||||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||||||||||||   ||||| |  || ||| |||  | |||  ||    || |   | |  || ||   ||     || |||||  |   ||  |  ||   |  ||| ||| ||||  
GGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGgtatgca--ttatctgcttaaaattaatctttttcttccaactggcatgtaatgatgccaattttcaat--tcgtttgctatatgttctgcaaatcatgttgtt

upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA12G14080.1 (Glycine max), 5'ss of exon 13
AGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAAgtatgaaacttttctacttgcattta----ctgcaactccagtccgctatttatccatctattttctcaatgttttcttctttcataagcatcaattcagttga
 || ||||||||||||||  | ||||| ||||| |||||||| ||||||||||||||||||||||||||||   |||||    || ||| |||  | |||    ||    || |   | |  || ||   || |      |     |||  ||  |  ||   |  ||| |||  |  
GGGGCTGGTTGGGTACAGGAGCGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGgtatgtg--ttctctgcttaaaattaatatctttttcttccaactggcatgtaatgatatgccaattttcaatttgtttgctatatgttctgcaaatcatgt--

upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 13
AGGTCTGGTTGGGTACAGATGTGTGTTTAGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAAgtatgaa-acttttctacttgcatttactgcaactccagtccgctatttatccatctattttctcaatgttttcttctttcataagcatcaattcagttga
 || |||||||| |||||  ||||||||||||| |||||||| || |||||||| ||||||||||||||| ||||||||   | ||  ||| |  | || | |          |    |  || || || |   || ||| |   |  |  |   ||  | ||    ||      
GGGCCTGGTTGGTTACAGGAGTGTGTTTAGCAGTGACACACGTGGCACTGGATTTATGCATCGTGCTTTCTTAAgtatgtttatttcactattccctttcagttttgtgttttttttttccttttcaatttcccttgtcacttcatggtcttgcaattggtatgggatcgcaat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116424469|gb|EG467061.1|EG467061
EST:     AGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAA                         CTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTG
genomic: AGCAGCGACACACGAGGAACTGGATTCATGCATCGTGCTTTCCTAAgtatgaaact ... gttcttgcagCTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTG