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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAATgtgagtgattcttacgatgttgtttccattcttgttgtttctttttctcttatgcagttttaacttttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G26590.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26590.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA08G03080.1 (Glycine max), 5'ss of exon 13
GTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAATgtgagtgattcttacgatgttgtttccattcttgttgtttctttttctcttatgcagttttaa---cttttgcag---------------------------
||||| || |||||||| ||||| ||| |||||||||| || || ||||||||||||||||  | ||| |  |||| ||    |       || |    | || || |||  ||||||   |  ||| ||                           
GTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtgagtagtactttct-tgtttttcgtctagcccaagtattaagtcctatt-tgcgtttttaatgcccattgtagttttcttctctcatctagcttgttcta

upper sequence: AT2G26590.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv11s0065g00450.t01 (Vitis vinifera), 5'ss of exon 13
GTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAATgtgagtgattcttacgatgttg----tttccattcttgttgtttctttttctct--tatgcagttttaacttttgcag------------------------------------------------------------------------------------
||||| || ||||| || ||||||||| |||||||||| || || |||||||||||| |||  ||| ||     ||      ||  || || |   |   |||  |     | || |   ||   | ||  |                                                                                     
GTACTTCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagttcgtatagctttaaaaacttaaatcctggcaatgaatttaacctcgctgtgaaagatttcttcttttatttagttattgtttcattagtttatagacttggtggctagatttttttgttttaaaagaaataatttttccctttttccatgcag