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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGGCAACTGCTAGAATGTGCTACAGAATGTTTGCAAAAACTTGGCCGGATCGTTCTCGCCGGTTGTTTTCGTCCTTTGACCCTGTCATTCAAAGGgtaaggcttttcaactctctatattctgcttattatcatcaatgaggcttgataaagcattccatatgttctcag

Basic information

species Arabidopsis thaliana
transcript AT2G20190.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G052078_T02 (Zea mays), 5'ss of exon 12
GTGCGGGCAACTGCTAGAATGTGCTACAGAATGTTTGCAAAAACTTGGCCGGATCGTTCTCGCCGGTTGTTTTCGTCCTTTGACCCTGTCATTCAAAGGgtaaggcttttcaactctctatattctgcttattatcatcaatgaggcttgataaagcattccatatgttctcag---------------
||  |||||||||| ||||  ||||| |||||||||||||| || ||||| || ||||| |||||  | |||  ||  ||||| ||||  || || |||||| | |   || |  ||||    ||| ||||   || |   |   | | || |||   || |||   ||    |               
GTTAGGGCAACTGCAAGAACTTGCTATAGAATGTTTGCAAAGACATGGCCTGAGCGTTCACGCCGTCTTTTTATGTTATTTGATCCTGCGATACAGAGGgtatg-ccactctatgctcttccctct-cttaagttcctatttccagatagacaaacacttgcattctttaattggagaaaaaaatgcag

upper sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 12
GTGCGGGCAACTGCTAGAATGTGCTACAGAATGTTTGCAAAAACTTGGCCGGATCGTTCTCGCCGGTTGTTTTCGTCCTTTGACCCTGTCATTCAAAGGgtaaggcttttcaactctct--atattctgcttattatcatcaatgaggcttgataaagcattccatatgttctcag-------
|| ||| | ||||| || |||||||||||||||||||||||||||||||| || |||||||| ||  | ||||| |||||||||||||  |||||| |||||     ||   | | | |  || |  | |||  | | ||   ||  |||      | | ||  |  ||     |        
GTACGGTCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGCGATTCAACGGgtatacacttatgattttgtggatgtcattcttccttttatttttgttgctcaggtcatcttttaaagtgaatgtaaatcgcag

upper sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA19G35460.1 (Glycine max), 5'ss of exon 12
GTGCGGGCAACTGCTAGAATGTGCTACAGAATGTTTGCAAAAACTTGGCCGGATCGTTCTCGCCGGTTGTTTTCGTCCTTTGACCCTGTCATTCAAAGGgtaaggcttttcaactctcta-----tattctgcttattatcatcaatgaggcttgataaagcattccatatgt-tctcag
|| ||| | ||||| || |||||||||||||||||||| ||||||||||| || |||||||| ||  | ||||| |||||||||||||  |||||| |||||     ||   | | | |       |||||   | ||||| |   | | |     |     | |  || |   |  |||
GTACGGTCTACTGCAAGGATGTGCTACAGAATGTTTGCCAAAACTTGGCCTGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGCTATTCAACGGgtatacacttatgattttgtggatgtcattctttcttttatctttgttcaagtcatcttttaaagtgaatgtaaattgcag

upper sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA13G19230.1 (Glycine max), 5'ss of exon 12
GTGCGGGCAACTGCTAGAATGTGCTACAGAATGTTTGCAAAAACTTGGCCGGATCGTTCTCGCCGGTTGTTTTCGTCCTTTGACCCTGTCATTCAAAGGgtaaggcttttcaactctctatattctgcttattatcatcaatgaggcttgataaagcattccatatgttctcag
|||||| | ||||| || ||||| ||||||||||||||||| |||||||| || ||||| || ||  ||||||| || ||||||||||  |||||||||||| |  | || |  | ||  | || |  ||| | |     |    | || | |  | |   ||||   || |||
GTGCGGTCGACTGCAAGGATGTGTTACAGAATGTTTGCAAAGACTTGGCCAGAACGTTCCCGTCGCCTGTTTTCATCATTTGACCCTGCTATTCAAAGGgtatg--tgtttatttgtcctttttttatttagttttgcttaatttgttttaaagtgaa---cata-actcgcag

upper sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G04850.1 (Glycine max), 5'ss of exon 12
GTGCGGGCAACTGCTAGAATGTGCTACAGAATGTTTGCAAAAACTTGGCCGGATCGTTCTCGCCGGTTGTTTTCGTCCTTTGACCCTGTCATTCAAAGGgta-aggct--tttcaactctctatattctgcttattatcatcaatgaggcttgataaagc----attccatatg-ttctcag
|||||| | ||||| || ||||| ||||||||||||||||| |||||||| || ||||| || ||  ||||||| || ||||||||||  |||||||||||| | | |  ||| ||     ||| |     ||||||   |   |   |||| ||         | |  | ||   || |||
GTGCGGTCGACTGCAAGGATGTGTTACAGAATGTTTGCAAAGACTTGGCCAGAACGTTCCCGTCGCCTGTTTTCATCATTTGACCCTGCTATTCAAAGGgtatatgtttatttgaaggtgttatttgtcctttattaattttttttttgcttaatttgttttaaagtgaacataactcgcag

upper sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 9
GTGCGGGCAACTGCTAGAATGTGCTACAGAATGTTTGCAAAAACTTGGCCGGATCGTTCTCGCCGGTTGTTTTCGTCCTTTGACCCTGTCATTCAAAGGgtaa---ggcttttcaactctctatattctgctta-------ttatc-atcaatg-aggcttgataaagcattccatatgttctcag
||  |   |||||| || |||||||||||||||||||||||||||||||| || ||||| || || || |||  || |||||| ||||| ||||||||||||    ||| |||   |||   | |   |  |||       ||||| || |||  |    |  ||| ||| ||  | | | | |||
GTAAGACTAACTGCCAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCCCGGCGCTTATTTGTGTGCTTTGATCCTGTTATTCAAAGGgtatatcggccttttctctccaaagaacttctttacctgattttatctattaatacataaatattaatgcagtcattttttacacag