Sequence
atgc intronic sequence ATGC exonic sequenceTCCAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatgtatggataatttaagatccacacaatcatgaatctaatggccagtattattaaatttacttagattgcgtactgatttttttttttgtcacactg...
Basic information
species | Arabidopsis thaliana |
transcript | AT2G14120.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 12
TCCAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatgtatggataatttaagatccacacaatcatgaatctaatggcc--agtattattaaatttact---tagattgcgtactgatttttttttttgtcacactg
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CCCTTTCTTGCGGAAGCGCATGGATGAAGTTATAGGGAACTTTCTACGAGAAGGCCTTGAACCCTCAGAGAACATGATTGCGCACCTCATAGAAATGGAGgtat-tgcac-taaaatgagtttacctattttgcttgtttagttgcctgagtatggcttggggtgctgtcttatcagaacattggtgaacagtctctcttca---
upper sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 12
TCCAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatgtat--ggataatttaagatccacacaatcatgaatctaatggccagtattattaaatttacttagattgcgtactgatttttttttttgtcacactg
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CCCTTTCTTGCGGAAGCGCATGGATGAAGTTATAGGGAACTTTCTACGAGAAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAGgtatgcaccaaaagagctcatcagaatttggttcttgtgcctaa-acttggtttctcgagtcatgcccaaattgtgttttgagatataaccaaatttctag-
upper sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 12
TCCAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatg------tatggataatttaagatccacacaatcatgaatcta--atggccagtattattaaatttactt--agattgcgtactgatttttttttttgtcacactg
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CCCTTTCTTGAGAAAGCGCATGGATGAAGTTATTGGGAACTTTTTACGAGAAGGCCTAGAACCCTCGGAGACTATGATAACACACGTCATAGAAATGGAGgtatgctgagatttggcttatttgatattt---taagtataaatgtatgcttgctcctcctactgcaattatgttaaaagtagatgctgaaaaatatagttga-------
upper sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 13
TCCAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatgtatggataatttaagatccacacaatcatgaatctaatggccagtattattaaatttacttagattgcgtactg--atttttttttttgtcacactg
||| | ||| |||||||||||| || ||||| || |||||| |||||||||| |||||||| || || ||||||| | | ||||||||||||||||||| ||| | | || || | || || | | | | | |||| | || | | || || | | || | | | |||
TCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatg-atgaa-atcaaaatatttaatcattctgaactgttgacatttgcagtattctagttgaaaataaaaactattgcaagtaattgtataaactcacctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124945808|gb|EL021782.1|EL021782EST: AAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAG ATGGATTATATAAACACCTCACACCCAAATTTTATCGGGG
genomic: AAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatgtatgg ... ccatttgcagATGGATTATATAAACACCTCACACCCAAATTTTATCGGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatgtatggataatttaagatccacacaatcatgaatctaatggccagtattattaaatttacttagattgcgtactgatttttttttttgtcacactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC