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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTCCACCAACAACATAGACGACTTCCAGACGATTTGGATTACTATTCGATGACAACTCTATCCCATGAAGGGCGTGAAAAACTTTCAAAGgtgtgttaaagtagttttcgagtagaatcagtgtgatttatagattatcttcttatgatgtgaaacaattataaattcag

Basic information

species Arabidopsis thaliana
transcript AT2G13440.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G13440.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA08G00380.1 (Glycine max), 5'ss of exon 11
ATGGTCCACCAACAACATAGACGACTTCCAGACGATTTGGATTACTATTCGATGACAACTCTATCCCATGAAGGGCGTGAAAAACTTTCAAAGgtgtgttaaagtagttttcgagtagaatcagtgtgatttatagattatcttcttatgatgtgaaacaattataaattcag--------------------------
 ||||     |||||||||||| |||||| || || |||||||||||| | ||||||||  | || | |||||  || ||||||||||| ||||| |||  | ||  |       || |||   | |  ||  |  ||||  | | |   | ||  ||    || ||||| ||                          
CTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCAATGACAACATTGTCTCTTGAAGCTCGCGAAAAACTTTCCAAGgtttgt--acgttataaatttataaaatagatat--ttggttcattacatccgtcacaagttcaatg--tacaaatttagtaataatgggcaaaaaataatgagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084836|gb|DR380595.1|DR380595
EST:     ACTATTCGATGACAACTCTATCCCATGAAGGGCGTGAAAAACTTTCAAAG                         GTGAGACCAGAGACGATCGGGCAGGCAAGCAGAGTGGGTGGAGTCAGTCCT
genomic: ACTATTCGATGACAACTCTATCCCATGAAGGGCGTGAAAAACTTTCAAAGgtgtgttaaa ... ataaattcagGTGAGACCAGAGACGATCGGGCAGGCAAGCAGAGTGGGTGGAGTCAGTCCT