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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtgaaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaatcttgttctcttttcttagcattacttttcatgagctaacatatctcttcttttatttcttttcttttttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G13370.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G010342_T01 (Zea mays), 5'ss of exon 10
CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtgaaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaatcttgttctcttttcttagcattacttttcatgagctaacatatctcttcttttatttcttttcttttttcttgcag
 |||   |||||||||||||| ||  | ||||||||||||||||| || |||||| | || || ||||| |||||||| ||  | || || |  || | |   | |        |   |||   |     ||||  | |   | |  |  |  | ||| |   ||| || ||                                               
GTGGAGAAATGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGGAAAACTATCCAATCTGTTTCCATGCTTGGCTTCCTTCATgtaattatttctcattgtattttcttgtcatcattatgatgaatgaaattgtcttttaatattgatatctgat--ttatttgtcgcag-------------------------------------------

upper sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 11
CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtg-aaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaatcttgttctcttttcttagcattacttttcatgagctaacatatctcttcttttatttcttttcttttttcttgcag
||||   |||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||| ||| |||||||  |  |||  || || ||  | |   |  |     ||||  |||   |         ||| |  || ||| |||                                                        
CTGGAGAAATGATACAAATGTCATTTTAGCCGATGAAATGGGCCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTGCAGgtatagtatcaattcctatttgatta--cacttgcccttgca-atgtaataatgcatgcgtttttgttcctt-gcacag-----------------------------------------------------

upper sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 11
CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtgaaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaat-cttgttctctt-ttcttagcattacttttcatgagctaacatatctcttcttttatttcttttcttttttcttgcag
 |||   |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| ||| | |||||  |    | | ||| ||  | |   | | |       ||    || |   ||| | ||  || || ||| | |||                                                        
TTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGgtatag---tatctctatttgattacacttgcc------cttgcaatgtaataatacatgcgcttttgttccttgcacag-----------------------------------------------------

upper sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 11
CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtgaaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaatcttgttctctt-ttcttagcattacttttcatgagctaacatatctcttcttttatttcttttcttttttct--tgcag------------------------
||||   |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |  ||||  |  || | |   |     | |   |||||  ||  ||    ||| | |  | || || ||    | | | ||  |    | |    | | ||||| || ||| ||      || |  | ||                         
CTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAGgtaagcatctagtagttattattagtagtattattattgcttttgtgtttattatcatttattgttattgttgttgtcattattattattattattacttttttcttgtagttccttgtagacttataatccaaggaaacattcatttgttcttacag

upper sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: PP1S93_123V6.1 (Physcomitrella patens), 5'ss of exon 12
CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtgaaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaatcttgttctcttttcttagcattacttttcatgagctaa-catatctcttcttttatttcttttcttttttcttgcag
 |||   || || || ||||| ||  | || ||||||||||||||||| || || ||||||||||| || |||||||| ||||||||||||   | ||           | | || | || | |||  |             | ||  | | | ||| | |   |  |||  |  | ||||   |||   |  | |||||  | || ||||         
TTGGAGGAACGACACCAATGTTATCCTTGCAGATGAAATGGGTCTTGGCAAGACAGTTCAGTCAGTCTCGATGCTTGGATTTTTGCAGgtgtggacct----------gacttagtgctctactttcttt------------ttttcctttttgttcat-gtgatgttttaaaaaaactaagtttattattattattattattattatttt---------

upper sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 12
CTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAGgtgaaaatctttttcttttcaagtgagcgttcaagtttgctcatgatttggaaatcttgttctcttttcttagcattacttttcatgagctaacatatctcttcttttatttcttttcttttttcttgcag
 |||   || || || ||||| ||| | || ||||||||||||||||| || || ||||||||||| || |||||||| ||| | ||||||   | |||          |   |  | ||    |  |||    | |     |||   ||||| |      ||        ||    | ||  ||| | |       |                     
TTGGAGAAACGACACCAATGTTATTCTTGCGGATGAAATGGGTCTTGGCAAGACGGTTCAGTCAGTGTCGATGCTTGGATTTCTTCAGgtgtggacctt----------acctactgctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacaaatgtatatatagcacact---------------------