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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAGgtaagcaaggaaaggaacaattctttcagaaattttatgtagttaaaagggaaaacagagattaatgatggaggtcactgttattggaaagtttgcttcgttgcttgcttattatgtagacatgattaatgtttataatcttttcacag

Basic information

species Arabidopsis thaliana
transcript AT2G07690.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os02g55410.2 (Oryza sativa), 5'ss of exon 13
ACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAGgtaagcaaggaaaggaacaattctttcagaaattttatgtagttaaaagggaaaacagagatt-aatgatggaggtcactgttattggaaagtttgcttcgttgcttgcttattatgtagacatgattaatgtttataatcttttcacag
||||| || || || || |||||||||||||| || ||||||||||||||||| ||||| ||||| || ||  |||| | ||||   |||||||||||| |           |   ||  | |||    || ||||  || | ||   ||| | |  |  |||    |                                                                              
ACTGCACAAGATAACATTGATCTGCAGACAACCATCCTTTCTAGATTTGATCTAATCTTTATTGTTAAAGATGTCAGAATGTATGATCAAGACAAGgtatg----acgcattattctttgtccagctcattgatgtgcttcagagactaaataaacttccaattgcag------------------------------------------------------------------------------

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G075978_T01 (Zea mays), 5'ss of exon 13
ACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAGgtaagcaaggaaaggaacaattctttcagaaattttat----gtagttaaaagggaaaacagagattaatgatggaggtcactgttattggaaagtttgcttcgttgcttgcttattatgtagacatgattaatgtttataatcttttcacag
|| || || || ||||| ||||||||||| || |||||||||||||||||||| ||||| || |||||||| ||||| | ||||   ||||| |||||| | ||| |||   ||  ||  | |||   || | |    | |  | | ||   ||    |  || |  ||  ||                                                                            
ACCGCGCAAGATAATATTGATCTGCAGACGACCATTCTTTCTAGATTTGATCTAATCTTTATCGTCAAGGATATCAGAATGTATGATCAAGATAAGgtatg-aagcaaa---actctttctacaggttttctcttctagcaacttagagactaagtccaacttcaaaatacag----------------------------------------------------------------------------

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G450055_T01 (Zea mays), 5'ss of exon 13
ACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAGgtaagcaaggaaaggaacaattctttcagaaattttatgtagttaaaagggaaaacagagattaatgatggaggtcactgttattggaaagtttgcttcgttgcttgcttattatgtagacatgattaatgtttataatcttttcacag
||||| || || ||||| ||||| ||||| || |||||||||||||||||||  ||||| |||||||| || ||||| | ||||  |||||| |||||| | ||| |||  |   |||  | ||||  || |||            | | ||  |    ||      |   ||                                                                        
ACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatg-aagcaaaaaat--atttctacagattttctattctagctgcctcggagactaattgcaacatcaaaatacag-----------------------------------------------------------------------

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 5'ss of exon 12
ACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAGgtaagcaaggaaaggaacaattctttcagaaattttatgtagttaaaagggaaaacagagattaatgatggaggtcactgt-tattggaaagtttgcttcgttgcttgcttattatgtagacatgattaatgtttataatcttttcacag
|||||||| || || |||||  ||||||||||||||||||| ||||||||  | || |||||||| || || ||||||| |||    || || ||||||  |||         |     |  ||     ||| || | |     ||||||  | |   |     |     ||   ||  ||| |||  |     ||  | | ||||                                        
ACTGCTCAAGATAACATCGACTTGCAGACAACAATTCTTTCAAGATTTGACTTGATTTTCATTGTGAAAGATATCAGGATGTACAGTCAGGATAAGgtactcaattct-----cttgcttggcaatggctttttgcatt----ggggaaattaaatcattccattttgtttcctggtgcatttgaagatgcaaatc--tacatgctg---------------------------------------