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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAGgttagaattcaactccattttgattaatacccattgcattctatctccagatcttattaacgtattgtttctcattctgttag

Basic information

species Arabidopsis thaliana
transcript AT1G76030.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ13375 (Selaginella moellendorffii), 5'ss of exon 11
ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAGgttagaattcaactccattttgattaatacccattgcattctatctccagatcttattaacgtattgtttctcattctgttag
|| |||||||| ||||||||| | ||||| ||||||||||| ||||||||    |    ||   |  || ||  ||| ||  |  |  | || |   | | |  ||  | ||                   
ATCTATCCACCTATCAACGTGTTGCCATCGCTTTCTCGTTTGATGAAGgt----accacacaggagcttaatagatatccggttaa--cgattttttgttttcttttgcatag------------------

upper sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ11911 (Selaginella moellendorffii), 5'ss of exon 11
ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAGgttagaattcaactccattttgattaatacccattgcattctatctccagatcttattaacgtattgtttctcattctgttag
|| |||||||| ||||||||| | ||||| ||||||||||| ||||||||    |    |    |  || ||  ||| ||  |  |  | || | | | | |  ||  | ||                   
ATCTATCCACCTATCAACGTGTTGCCATCGCTTTCTCGTTTGATGAAGgt----accgcaaaggagcttaatagatatccggttaa--cgattttctgttttcttttgcatag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124814230|gb|EH899096.1|EH899096
EST:     ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG                         AGTGCTATCGGCGAGGGCATGACTCGTAAAGACC
genomic: ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAGgttagaattc ... attctgttagAGTGCTATCGGCGAGGGCATGACTCGTAAAGACC
EST: gi|86058263|gb|DR354020.1|DR354020
EST:     ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG                         AGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAAC
genomic: ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAGgttagaattc ... attctgttagAGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAAC
EST: gi|116457675|gb|EG500267.1|EG500267
EST:     ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG                         AGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAAC
genomic: ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAGgttagaattc ... attctgttagAGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAAC
EST: gi|124804903|gb|EH892422.1|EH892422
EST:     TCGTTTAATGAAG                         AGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAAC
genomic: TCGTTTAATGAAGgttagaattc ... attctgttagAGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAAC
EST: gi|163990922|gb|ES138772.1|ES138772
EST:     ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAG                         AGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCT
genomic: ATATATCCACCCATCAACGTGCTTCCATCCCTTTCTCGTTTAATGAAGgttagaattc ... attctgttagAGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCT