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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCTGGACTTTGATGGATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctttattcatctatgcagcttataaagcgtatgcgcaaaagttagaacttgcaagaaatgtcataactgcttcctttttccag

Basic information

species Arabidopsis thaliana
transcript AT1G73020.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116436471|gb|EG479063.1|EG479063
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423940|gb|EG466532.1|EG466532
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGTTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAA
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAA
EST: gi|116423946|gb|EG466538.1|EG466538
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116435865|gb|EG478457.1|EG478457
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436463|gb|EG479055.1|EG479055
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116435910|gb|EG478502.1|EG478502
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAGGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436478|gb|EG479070.1|EG479070
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436399|gb|EG478991.1|EG478991
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436465|gb|EG479057.1|EG479057
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423949|gb|EG466541.1|EG466541
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGTTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423860|gb|EG466452.1|EG466452
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423780|gb|EG466372.1|EG466372
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436460|gb|EG479052.1|EG479052
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436362|gb|EG478954.1|EG478954
EST:     GGTGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436484|gb|EG479076.1|EG479076
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436480|gb|EG479072.1|EG479072
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436488|gb|EG479080.1|EG479080
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436474|gb|EG479066.1|EG479066
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116435879|gb|EG478471.1|EG478471
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116432868|gb|EG475460.1|EG475460
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATTGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436404|gb|EG478996.1|EG478996
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423711|gb|EG466303.1|EG466303
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436467|gb|EG479059.1|EG479059
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116432873|gb|EG475465.1|EG475465
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATTGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423947|gb|EG466539.1|EG466539
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGTTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436479|gb|EG479071.1|EG479071
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436359|gb|EG478951.1|EG478951
EST:     GGTGGTTCTTTACCTTATCTTAAGTACAGATACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423849|gb|EG466441.1|EG466441
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436402|gb|EG478994.1|EG478994
EST:     GATGGTTCTTTACCTTATTTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436468|gb|EG479060.1|EG479060
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423710|gb|EG466302.1|EG466302
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423855|gb|EG466447.1|EG466447
EST:     GGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436486|gb|EG479078.1|EG479078
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116432871|gb|EG475463.1|EG475463
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATTGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423854|gb|EG466446.1|EG466446
EST:     GGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116457871|gb|EG500463.1|EG500463
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116435877|gb|EG478469.1|EG478469
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116436469|gb|EG479061.1|EG479061
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: gi|116423941|gb|EG466533.1|EG466533
EST:     GATGGTTCTTTACCTTATCTTAAGTACAGTTACCGAAAATATCGAGCTAG                         GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC