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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACCAGATTTGGGATGGATGAAAAGATTAGAACAGATACTTGGTCGAAAACACCAGCGTAACCTTCAGgtatgaaatcacaaacctactacacctcatagaggaaggttcctccttgtcctcattctgatcatctctgcttcgtccag

Basic information

species Arabidopsis thaliana
transcript AT1G69340.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G69340.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 11
CCAACCAGATTTGGGATGGATGAAAAGATTAGAACAGATACTTGGTCGAAAACACCAGCGTAACCTTCAGgtatgaaatcacaaacctactacacctcatagagga--aggttcctccttg---tcctcattctgatcatctctgcttcgtccag
|||||| ||||||||||||||||  |||||| | || ||||||||||| |||||||||||||||||||| |||||   | || ||  || | ||||   |  || |  |    |   | ||   || |   ||||||     ||     ||  ||
CCAACCGGATTTGGGATGGATGAGGAGATTACAGCAAATACTTGGTCGGAAACACCAGCGTAACCTTCATgtatgctct-accaatttattccaccctgtttagaatcacacacacacatgcaatcttagatctgatttcacctctactgtatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088362|gb|DR384121.1|DR384121
EST:     TGAAAAGATTAGAACAGATACTTGGTCGAAAACACCAGCGTAACCTTCAG                         GCAATCTATGTTCTTCATCCAACTTTCCACTTGAAGGCTACAATCTTAACG
genomic: TGAAAAGATTAGAACAGATACTTGGTCGAAAACACCAGCGTAACCTTCAGgtatgaaatc ... cttcgtccagGCAATCTATGTTCTTCATCCAACTTTCCACTTGAAGGCTACAATCTTAACG