Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCCTACAATCTTTGCCATCAGAGAAGCACAACTTCTATGGCCTGACACAAAAATTGATTGCTTGGTTTCGATTGGCTCTGGCTCTGTACCAACAAGGgtaattcccgtttttcctgtggctccagattgtgcaaaatctatgtttatgttggaaaaccactgaaatacatatggtggataaaatcttgccgtccttgtaatgttaagtaattatttttcattgttgatctaactcccttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G61850.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G426556_T01 (Zea mays), 5'ss of exon 10
CAATCCTACAATCTTTGCCATCAGAGAAGCACAACTTCTATGGCCTGACACAAAAATTGATTGCTTGGTTTCGATTGGCTCTGGCTCTGTACCAACAAGGgtaattcc---cgtttttcctgtggctccagattgtgcaaaatctat------gtttatgttggaaaaccactgaaatacatatggtggataaaatcttgccgtccttgtaatgttaagtaattatttttcattgttgatctaactcccttgtag
||||||||||||||||||||| ||||||||||||||| | ||||| ||  ||  ||| |||||  | || ||||| || | |||||| || ||||| | ||||||||    ||| |  | |     |  | ||| |  || |   |       ||  |  |  ||| ||  | || ||  |  |     |  |||| ||                                                        
CAATCCTACAATCTTTGCCATTAGAGAAGCACAACTTTTGTGGCCAGATGCACGAATAGATTGTCTAGTCTCGATAGGATGTGGCTCAGTTCCAACTAAGgtaattcaatgcgtctcgctttgttgttgaaattatctaatactcagcaactggtacaattctgaatacttcagagatttacttatgaaaataaatttta-------------------------------------------------------

upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G451672_T01 (Zea mays), 5'ss of exon 6
CAATCCTACAATCTTTGCCATCAGAGAAGCACAACTTCTATGGCCTGACACAAAAATTGATTGCTTGGTTTCGATTGGCTCTGGCTCTGTACCAACAAGGgtaattc-ccgtttttcctgtggctcc--agattgtgcaaaatctat------gtttatgttggaaaaccactgaaatacatatggtggataaaatcttgccgtccttgtaatgttaagtaattatttttcattgttgatctaactcccttgtag
||||||||| ||||||||||| ||||||||||||||| | ||||| || |||  ||| |||||  | |||||||| || | |||||| || ||||| | |||||||    | |  || | |   |    | ||| |  || |   ||      ||  |  |  ||| ||  | |||||  |  ||    |  |||| ||                                                        
CAATCCTACGATCTTTGCCATTAGAGAAGCACAACTTTTGTGGCCAGATACACGAATAGATTGTCTAGTTTCGATAGGATGTGGCTCAGTTCCAACTAAGgtaatttattgctgctcgttttattattgaaattatctaacactcatcatttggtgcaattctgaatacttcagaaatttacttgtgaaaataaatttta-------------------------------------------------------

upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA17G01850.1 (Glycine max), 5'ss of exon 12
CAATCCTACAATCTTTGCCATCAGAGAAGCACAACTTCTATGGCCTGACACAAAAATTGATTGCTTGGTTTCGATTGGCTCTGGCTCTGTACCAACAAGGgtaattcccgtttttcctgtggctccagattgtgcaaaatctatgtttatgttggaaaaccactgaaatacatatggtggataaaatcttgccgtccttgtaatgttaagtaattatttttcattgttgatctaactcccttgtag
|||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| ||  |||||||  | || | ||| ||||| | ||| |||||||   |  | ||  ||||   |  || || || || |  ||| | | |||| |||||  | |   |      | |    | |    |||     |||||    | |                                      
CAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCTGATACAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACTAGGgtaag--caatcttcactgt---tttag-ttctgtaataa-tat-tctgtgtttgaaaaagaatatcaagggctttgatagttattcattgtaacacttgtttcataa--------------------------------------

upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 11
CAATCCTACAATCTTTGCCATCAGAGAAGCACAACTTCTATGGCCTGACACAAAAATTGATTGCTTGGTTTCGATTGGCTCTGGCTCTGTACCAACAAGGgtaattc-ccgtttttcctgtggctccagattgtgcaaaatctatgtttatgttggaaaaccactgaaatacatatggtggataaaatcttgccgtccttgtaatgttaagtaattatttttcattgttgatctaactcccttgtag
|||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||| ||  |||||||  | || | ||| ||||| | ||| ||||||| |   | | | |  | | | ||   | |    | | ||| |||| |     ||| | ||  |   |  ||| | |    |   |    |     |  ||                                            
CAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCAGATACAAAAATTGACTGTCTGGTTTCAGTAGGATGTGGTTCTGTTCGAACCAGGgtaagtaatcttctctgttttagttctctaata---atattctgtgttcaaaaaagaagatcaagggctttgata-gttattcattgtaacacttgtttcatag-------------------------------------------