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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGAATGCTATTAAGCATCATTTATCAGATGTCACAACTAAGGCAATGGCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTGTTCAGAgtatgccaactcctacctagctagttgattctagattttctggttataatcacgcatgaactcatttcacgtccctgattttttcttattaattatgccgcgatgaaaattagtcaatgatacttctcaccagtgttgggcttgttgtattgcttacag

Basic information

species Arabidopsis thaliana
transcript AT1G60070.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 12
TCGAGAATGCTATTAAGCATCATTTATCAGATGTCACAACTAAGGCAATGGCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTGTTCAGAgtatgccaactcctacctagctagttgattctagattttctggttataatcacgcatgaactcatttcacgtccctgattttttcttattaattatgccgcgatgaaaattagtcaatgatacttctcaccagtgttgggcttgttgtattgcttacag
| |||| ||| |||||||  |||   |||||| ||||||||   || |||||  | |||||||| |||||| | |||| |||||||||||| |||||||||||||   |  |||      ||| || | |     |||    ||| || |  | ||||| ||    | | ||  ||   |||| | || | |   |      ||| | |                                                  
TTGAGATTGCCATTAAGCGCCATACCTCAGATCTCACAACTCGAGCTATGGCTTTGATTGCTCTCTTAAAGCTTTCATGTCGTTTCCCATCTTGTTCAGAgtatgttcatgccttttcttctatttaaat----gtttataagttctatttcc-catgatctt-cctgatgtaact---ttttccctactgacccttaatatatgcaca--------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125021087|gb|EL093356.1|EL093356
EST:     GCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTGTTCAGA                         GAGAGTTAAAAGTATTATAGGACAGAACAAAGGTAGCTTTGT
genomic: GCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTGTTCAGAgtatgccaac ... ttgcttacagGAGAGTTAAAAGTATTATAGGACAGAACAAAGGTAGCTTTGT