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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGGATAGATATGCAAGACAAGGGCATTTGAAAAGCATCAAATTGAGTTTTGTTGGTCATTCTATTGGCAATGTCATCATCAGAACAGCAATTGCCGgtaatattctttgaactctggtaaatattgaatgactcttagttatgtttcagtgtttttgacatctcttttgttctttcag

Basic information

species Arabidopsis thaliana
transcript AT1G58350.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G58350.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G08190.3 (Glycine max), 5'ss of exon 13
AAAAAGGATAGATATGCAAGACAAGGGCATTTGAAAAGCATCAAATTGAGTTTTGTTGGTCATTCTATTGGCAATGTCATCATCAGAACAGCAATTGCCGgtaa-tattctttgaactctggtaaatattgaatgactcttagttatgtttcagtgtttttgacat--ctcttttgttct-ttcag----------------------------------------------------------------------------------------------------------------
|| | ||||| |  | ||||| | ||  | ||||||   |||||  | || |||||||||||||||||||| ||| |||| ||||| |||||  |  | ||||  ||  |    |  | |     |||   | |       |    |     || |    | ||||   | |||| || | || |                                                                                                                 
AAGATGGATAAAGCTTCAAGAAATGGAAACTTGAAAGATATCAAGCTTAGCTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagagagcgtcatggagccatatctaagatacttacatacatatgtctccatatcgggtccacacttgggttatatgtatagttcaaactctctattcaattcag

upper sequence: AT1G58350.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G08190.1 (Glycine max), 5'ss of exon 13
AAAAAGGATAGATATGCAAGACAAGGGCATTTGAAAAGCATCAAATTGAGTTTTGTTGGTCATTCTATTGGCAATGTCATCATCAGAACAGCAATTGCCGgtaa-tattctttgaactctggtaaatattgaatgactcttagttatgtttcagtgtttttgacat--ctcttttgttct-ttcag----------
|| | ||||| |  | ||||| | ||  | ||||||   |||||  | || |||||||||||||||||||| ||| |||| ||||| |||||  |  | ||||  ||  |    |  | |     |||   | |       |    |     || |    | ||||   | |||| || | || |           
AAGATGGATAAAGCTTCAAGAAATGGAAACTTGAAAGATATCAAGCTTAGCTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429147|gb|EG471739.1|EG471739
EST:     TCAGAACAGCAATTGCCG                         ATAGTTTAATGGAACCATACAGGAAGTATCTACACACATATCTATCGCTTT
genomic: TCAGAACAGCAATTGCCGgtaatattct ... gttctttcagATAGTTTAATGGAACCATACAGGAAGTATCTACACACATATCTATCGCTTT