Sequence
atgc intronic sequence ATGC exonic sequenceGAAGGAACATCGAATTACTTCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCTCATCAAGgttagtgttgaatttgctatatatattcctttctctgtgtcaactctctgttgaaacctgtttttgtcttcttattttttgacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G55730.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G55730.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 11
GAAGGAACATCGAATTACTTCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCT-CATCA--AGgttagtgttgaatttgctatatatattcctttctctgtgtcaactctctgttgaaacctgtttt-tgtcttcttat-----tttttgacag---------
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GAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAGgtcagtttttaatcaaaatttttaactggtgtccatgtggacgaattaaacccaaatatattccctgtgattccaacaaagttctcagcagttattgaaa
upper sequence: AT1G55730.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: PP1S245_10V6.1 (Physcomitrella patens), 5'ss of exon 12
GAAGGAACATCGAATTACTTCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCTCATCAAGgttagtgt-tgaatttgctatatatattcctttctctgtgtcaactctctgttgaaacctgtttttgtc--ttcttattttttgacag--------------------
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GAGGGCACATCAAATTACTTTAAGGGCTTGATGCTGATTCTTTGCTATTTGATTGTGGGAGCCAGCTTCTTCGTGCACGTCGACATTCCGGACGCGCACCgtgcgtatcttcctcacatacgcctttgagattaatacattcttgtttgaagttatatgtacaaattccaacaactctaaaaattggattctgaacgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116460063|gb|EG502655.1|EG502655EST: CTATTTGATAGTCGCCGCTAATTTCTTTGTACACGAAGATCCTCATCAAG ATGATATATAAATCAACCCAAAAGAACATAAAAAGTTTGTATCCTAAAACT
genomic: CTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCTCATCAAGgttagtgttg ... tttttgacagATGATATATAAATCAACCCAAAAGAACATAAAAAGTTTGTATCCTAAAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GAAGGAACATCGAATTACTTCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCTCATCAAGgttagtgttgaatttgctatatatattcctttctctgtgtcaactctctgttgaaacctgtttttgtcttcttattttttgacag
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