1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAGgtacattatctaagacccccttttcaacatttttcttttctggcttggaaagagcggtaattggtttgtgtaaatactttgatgattgtttgtctatctatagatctcatttcaaagcaatcaagaaccttgtcagagcctaattgtgaggaatctaattctgttatataatggaactttttag
species | Arabidopsis thaliana |
transcript | AT1G51710.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG GTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCGEST: gi|125019217|gb|EL091486.1|EL091486
genomic: GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAGgtacattatc ... aactttttagGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCG
EST: TAAACCCACAGGAAG GTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCGEST: gi|86084161|gb|DR379920.1|DR379920
genomic: TAAACCCACAGGAAGgtacattatc ... aactttttagGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCG
EST: GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG GTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCGEST: gi|125269879|gb|EL283964.1|EL283964
genomic: GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAGgtacattatc ... aactttttagGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCG
EST: GCGTCTGCAAATGGAAGTGGAGAATCGTCCACAGTAAACCCACAGGAAG GTACTTCTTCTGAGAA
genomic: GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAGgtacattatc ... aactttttagGTACTTCTTCTGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAGgtacattatctaagacccccttttcaacatttttcttttctggcttggaaagagcggtaattggtttgtgtaaatactttgatgattgtttgtctatctatagatctcatttcaaagcaatcaagaaccttgtcagagcctaattgtgaggaatctaattctgttatataatggaactttttag
- - - - - TGGAAG
- - - - - - - AGTGGA
- - - - - - - - GTGGAG
- - - - - - - - TGGAGA
- - - - - - - - - GGAGAA