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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTCGGCTTAGAGAATATCAAGGAGTAGATCCGCATTTTGATACAATTGCCAGACAGTACCATGACATTGTTAAGgtacaagcaagtcattacttaagtcatttcaccttctaaatttgatttgacttgtgggaatacaacaacacgaattataatgagagctttcatggttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G50710.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797918|gb|AU229534.1|AU229534
EST:     TAGATCCGCATTTTGATACAATTGCCAGACAGTACCATGACATTTTTAAG                         AAACTGGAAAATATGCAGTGGACCATTCATCAAGTAGAAATGGACCTTAAG
genomic: TAGATCCGCATTTTGATACAATTGCCAGACAGTACCATGACATTGTTAAGgtacaagcaa ... ggttttgcagAAACTGGAAAATATGCAGTGGACCATTCATCAAGTAGAAATGGACCTTAAG
EST: gi|164161534|gb|ES024280.1|ES024280
EST:     GTACCATTGACATTGTTAAG                         AAACTGGAAAATATGCAGTGGACCATTCATCAAGTAGAAATGGACCTTAAG
genomic: GTACCA-TGACATTGTTAAGgtacaagcaa ... ggttttgcagAAACTGGAAAATATGCAGTGGACCATTCATCAAGTAGAAATGGACCTTAAG
EST: gi|164050464|gb|ES194201.1|ES194201
EST:     TAGATCCGCATTTTGATACAATTGCCAGACAGTACCATGACATTGTTAAG                         AAACTGGAAAATATGCAGTGGACCATTCATCAAGTAG
genomic: TAGATCCGCATTTTGATACAATTGCCAGACAGTACCATGACATTGTTAAGgtacaagcaa ... ggttttgcagAAACTGGAAAATATGCAGTGGACCATTCATCAAGTAG
EST: gi|125024820|gb|EL097089.1|EL097089
EST:     CCGCATTTTGATACAATTGCCAGACAGTACCATGACATTGTTAAG                         AAACTGGAAAATATGCAGTGGA
genomic: CCGCATTTTGATACAATTGCCAGACAGTACCATGACATTGTTAAGgtacaagcaa ... ggttttgcagAAACTGGAAAATATGCAGTGGA