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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTTTGCAACATTTAAAGgtaaaaccgagaaatgactaggtgacatgctaaatgctcaatgcagtacattgattccttgtcttctttcttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G47550.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os11g17600.1 (Oryza sativa), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTTTGCAACATTTAAAGgtaaaac-cgagaaatgactaggtgacatgctaa---atgctcaatgcagtacattgattcct-tgtcttctttcttgttgcag------------------------------------
|||||||| ||  |||||||||||||||||||| || ||||||||||||| |||||||| || ||| | ||     | ||||| | |  | ||   |      |||| |  | |    ||  |  |  ||||||  | ||  ||      | |    | |||||                                     
AGAGGGCAACTCCAGAGGCCTGACCATGCTGATATGAGGTACAAATGCAGGACATATGCCCGACTTCTACAGTTCATCAAGgttacatgcaagttgtcctgttgtgaaaaacgatactattttacaaacagtactgttatggctacaatatgtgaaattttgcaccatattctcatgctttatattataatttttttctag

upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTTTGCAACATTTAAAGgtaaaaccgagaaatgactaggtgacatgctaaatgctcaatgcagtacattgattccttgtcttctttcttgttgcag----------------------------------------------------
 | || ||| |||| ||||| || |||||||||||| ||||||| ||||| |||||||| || ||| || | |||||||||||  ||    | |     ||       ||||    | ||| |   |  |||  ||   |     | | | |   |  |                                                     
CGGGGACAGTTGAAAAGGCCAGATCATGCTGATTTGAGGTACAAGTGCAGGACATATGCACGCCTTCTGAAGCATTTAAAGgtttaattatggatgatttacaatttctgcttcgagttcagttttgcgcatatatatatatatatatatatatatatattgagttaatttctttgtttcctcccttaattatctttcctctaaacttgcag

upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTTTGCAACATTTAAAGgtaaaaccgagaaatgacta-ggtgacatgctaaatgctcaatgcagtacattgattccttgtcttctttcttgttgcag------
 |||| ||| |||||||||| |||||||||||| | ||||| |||||||| || |||||||| ||| | ||||| |||||||| | |   |  |   | |    ||||   | |||      |  ||     ||       | |||| | | ||  ||||       
CGAGGACAGTTGAAGAGGCCAGACCATGCTGATCTTCGGTATAAATGCAGGACTTATGCTCGCCTTCTACAACACTTAAAGgtcatattaaatacgaatttcaatgactatccaaagtggtgacacacccacttatacttctttcttttgtttttgtgcatttccag

upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ12163 (Selaginella moellendorffii), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTTTGCAACATTTAAAGgtaaaaccgagaaatgactaggtgacatgctaaatgctcaatgcagtacattgattccttgtcttctttcttgttgcag
|| || |||||||| ||||| ||||| || ||||| || | |||||| ||||||||||||||| |  |||| || ||||||||   ||| |    |  || |      |   | |    | ||    |||                              
AGGGGTCAGCTGAAAAGGCCCGACCACGCAGATTTACGATTCAAATGTAGAACATATGCTCGTTTGCTGCAGCACTTAAAGgtgctacc-atttctaccttgtctttgtctcacactagccatttgatactccag-------------------------

upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ29370 (Selaginella moellendorffii), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTTTGCAACATTTAAAGgtaaaaccgagaaatgactaggtgacatgctaaatgctcaatgcagtacattgattccttgtcttctttcttgttgcag
|| || |||||||| ||||| ||||| || ||||| || | |||||| ||||||||||||||| |  |||| || ||||||||   ||| |    |  || |      |   | |    | ||    ||| |                            
AGGGGTCAGCTGAAAAGGCCCGACCACGCAGATTTACGATTCAAATGTAGAACATATGCTCGTTTGCTGCAGCACTTAAAGgtgctacc-atttctacctcgtctttgtctcacactagccatttgatacttcag-------------------------