Sequence
atgc intronic sequence ATGC exonic sequenceAGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGGgtaagccctgactacaagctgattctctctttgtgctgtgtatatatgcagacaactgcattctttactaaatgttagattatgcaaaataactcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G34320.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G148773_T01 (Zea mays), 5'ss of exon 11
AGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGGgtaagccctgactacaagctgattctctctttgtgctgtgtatatatgcagacaactgcattctttactaaatgttagattatgcaaaataactcag
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GGCTCATCATGGTTTCGGTTGGGTTGGAGAGTGGGCAAGTACCGGgtatgtatctgattttgttcatttctaacaggaaattccatatcggggttcaccatggctagaacatcggagtaat-gatccttttgtcttacacag
upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 14
AGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGGgtaagccctgactacaagctgattctctctttgtgctgtgtatatatgcagacaactgcattctttactaaatgttagattatgcaaaataactcag
||| |||||||| ||||||||||||||||||||||| | | | |||| || | ||| | | | | | |||| | | | | | | | || | || ||| |||| | | || || | |
AGCTCATCATGGCTTTGGATGGGTTGGAGAATGGGCTAATACAGGgtgag-----agaacagaat-actagatttacttgctctatgtttgtacgttctaccg-gtttttttctaa-tataagtttgtatag----------
upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 14
AGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGGgtaagccctgactacaagctgattctctctttgtgctgtgtatatatgcagacaactgcattctttactaaatgttagattatgcaaaataactcag
||| |||||||| ||||||||||||||||||||||| | | |||| || | || | | || ||| ||| ||| || | ||| | | | | | ||| |||| || || || | |
AGCTCATCATGGCTTTGGATGGGTTGGAGAATGGGCTAACACAGGgtgaggacagaatgctag---attttcttcctgta-tgcttctatgttc-------tacctagttttctaa-tgcaagtttgtatag----------
upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: PP1S54_228V6.1 (Physcomitrella patens), 5'ss of exon 11
AGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGGgtaagccctgactacaagctgattctctctttgtgctgtgtatatatgcagac---aactgcattctttactaaatgttagattatgcaaa-ataactcag--
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GAAGCATCATGGCTTTGGATGGGTTGGAGAGTGGGCGAATGCTGGgtaagttgacactcctttctgtttgcgttcttctgtaacgt-tattcctggacttgagttgcat-ctctattagg-attttctgaagcgactatattccaagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124753396|gb|EH843526.1|EH843526EST: AGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGG GTCGGAGGCGAAC
genomic: AGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGGgtaagccctg ... aataactcagGTCGGAGGCGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGGgtaagccctgactacaagctgattctctctttgtgctgtgtatatatgcagacaactgcattctttactaaatgttagattatgcaaaataactcag
- - - - - - - - - - - TTGGAG
- - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - GGAGAA