1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAGgtttgattttcttccctcacatttttgattctccacacaaattgcttcttcttcttcatcatctggattctggagtgattgatgagtgttttgtttgattaaaaattgcag
species | Arabidopsis thaliana |
transcript | AT1G31970.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAG GAAATCAAAATTGTATGGAGCTCATTTCAAAGAAATAGCTGCTGAEST: gi|124866293|gb|EH950730.1|EH950730
genomic: AAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAGgtttgatttt ... aaaattgcagGAA-TCAAAATTGTATGGAGCTCATTTCAAAGAAATAGCTGCTGA
EST: AAGTTTGGCACTCATGTAAAGAAAAAG GAATCAAAATTGTATGGAGCTCATTTCAAAGAAATAGCTGCTGATGCTCCTEST: gi|164129382|gb|ES207453.1|ES207453
genomic: AAGTTTGGCACTCATGTAAAGAAAAAGgtttgatttt ... aaaattgcagGAATCAAAATTGTATGGAGCTCATTTCAAAGAAATAGCTGCTGATGCTCCT
EST: AAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAG GAATCAAAATTGTATGGAGCTCATTTCAAAGAAATAGCTGCTGA
genomic: AAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAGgtttgatttt ... aaaattgcagGAATCAAAATTGTATGGAGCTCATTTCAAAGAAATAGCTGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGCCAGCTGATCTTTTGAAGTTTGGCACTCATGTAAAGAAAAAGgtttgattttcttccctcacatttttgattctccacacaaattgcttcttcttcttcatcatctggattctggagtgattgatgagtgttttgtttgattaaaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA