Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGGAGTCTGCAAAGTTGCGTCAAATTATGCAAACAATTTTAACGTTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGgtatcatattttcctattgatttcaaatttgatattctgaaagcatctgctcataatgcctttgtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G31810.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 12
GTGAAGGAGTCTGCAAAGTTGCGTCAAATTATGCAAACAATTTTAACGTTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGgtatcatattttc----ctattgatttcaaatttgatattctg--------aaagcatct--gctcataatgcctttgtgttgcag-----
|||||||| |||| ||| |||||||| || |||||||||||| | |||||||||||||| || |||||||| || ||  ||||||   | | |||     | |  ||      ||||||  | |         | ||| |||  ||| | |   |||||   ||  |      
GTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAGgtaatgtctattcaactttgtaaatacatcttttgatgcttttcttgacatagagcttcttagcttacagccccttttccttatactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044354|gb|DR340109.1|DR340109
EST:     GCAAACAATTTTAACGTTGGGAAATGCTCTAAATCAGGGAACTGCGAGAG                         GGTCTGCTGTTGGGTTCAAACTAGACAGTCTCCTTAAATTATCTGATACTC
genomic: GCAAACAATTTTAACGTTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGgtatcatatt ... tgtgttgcagGGTCTGCTGTTGGGTTCAAACTAGACAGTCTCCTTAAATTATCTGATACTC
EST: gi|86044355|gb|DR340110.1|DR340110
EST:     GCAAACAATTTTAACGTTGGGAAATGCTCTAAATCAGGGAACTGCGAGAG                         GGTCTGCTGTTGGGTTCAAACTAGACAGTCTCCTTAAATTATCTGATACTC
genomic: GCAAACAATTTTAACGTTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGgtatcatatt ... tgtgttgcagGGTCTGCTGTTGGGTTCAAACTAGACAGTCTCCTTAAATTATCTGATACTC