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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcatttattagccatgatgtttttgtaactttcttgtttcgattttactttttccctttgcttaatcctgtgtcaatgtgtcttctactccag

Basic information

species Arabidopsis thaliana
transcript AT1G18470.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18470.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA05G07960.1 (Glycine max), 5'ss of exon 12
GTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcatttattagccatga-tgtttttgtaactttcttgtttcgattttactttttcc---ctttgcttaatcctgtgtcaatgtgtcttctactccag
|| |||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||| |  |    |      |||| |  |||||| | |    |  ||    | ||  ||||||    |||  |  ||  ||| | || | | | || ||     
GTTTGGAGACTCCAGGCAGCTCTTGGTGAACAAACAGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATgtaaaacccccaaccttaaatgagtaattttgtgagtcatgttcttttgctgtatattttccaaagtttcttatatgatgtatgaaggagccgtccacaa---

upper sequence: AT1G18470.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA17G13040.1 (Glycine max), 5'ss of exon 12
GTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcatttattagccatga-tgtttttgtaactttcttgtttcgattttactttttcc---ctttgcttaatcctgtgtcaatgtgtcttctactccag
|| |||||||| || ||||| ||||| |||||||| ||||| ||||| |||||||| ||||| ||||||||||| |||||||||||     | |      |||| |  |||||| | |    |  ||    | ||  | ||||    |||     ||  ||| | ||   | | || ||     
GTTTGGAGACTCCAGGCAGCTCTTGGCGAACAAACTGAAATTACAAAGTTCAGCCAACAGGAGTATGAAAGACTTCAAAATgtataacacataaccttaaatgagtaattttgtgagtcatgtacttatgctgtatatcttccaaagtttctaatatgatgtatgaagaagccctccacaa---

upper sequence: AT1G18470.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv17s0000g04160.t01 (Vitis vinifera), 5'ss of exon 12
GTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcatttattagccatgatgtttttgtaactttcttgtttcgattttactttttccctttgcttaatcc-tgtgtcaatgtgtcttctactccag
||||||||||||||||| ||||||||||| ||| ||||||||||||| | |||  ||||||| ||||||||||| ||||||||| |||  |  |       ||||   ||  || | |   | | |    |  |  | |   ||| |     | | ||| |  |   |   |||   | | 
GTGTGGAGACTTCAAGCTGCACTTGGTGAGCAATCAGAAATCACAAAGTACAGTAAGCAGGAGTATGAAAGACTTCAAAATgtaaatttctcaaccttgactgatcgattcttatcatagatatgtgacgtgcatgtctgaacttggtgactttcatgttttgacaagctatctcaacaac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079365|gb|DR375122.1|DR375122
EST:     AAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAAT                         GAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGATATCAGTTTGGTACTG
genomic: AAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcat ... tctactccagGAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGATATCAGTTTGGTACTG