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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCATCATTCCTTCTTTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTATCTTTTAAAGAGgtacattttttactctttggtgtattctgtttcctcttattccattccactcgcatactcatcctgattcttgtcctcacatctaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G16780.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16780.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 11
AAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCATCATTCCTTCTTTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTATCTTTTAAAGAGgtacattttttactctttggtgta-ttctgtttcctcttattccattccac-----tcgcatactcatcctgat--tcttgtcctcacatctaaacag--
 ||||||||||||||||| |||||||| |||||||| |||||| | |||||||| ||||||||||||||||| || |||||| ||| | |||||||| |||| |          |||     || ||  | ||    || ||    |||          ||| |||    || |  | || |  |    | | || ||  
CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGACGAGGTTTCTGCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagcttcaacctaattaggcttaaatttgtttaggtccctatataatacatgctcggtttgttgatgttctgttttttttttaagagga

upper sequence: AT1G16780.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA08G24120.1 (Glycine max), 5'ss of exon 10
AAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCATCATTCCTTCTTTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTATCTTTTAAAGAGgtac-----attttttactctttggt-gtattctgtttcctcttattccattccactcgcatactcatc--ctgat-tcttgtcctcacatctaaacag-
 ||||||||||||||||| |||||||| |||||||| |||||| | |||||||| |||||||| ||||||||  | |||||| ||| | |||||||| |||| |     | |   |||    |  |     |    ||  | |   ||| |        ||| ||| |    |||| |  |||  |      ||    | 
CAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGATGAGGTTTCTTCATTTGCTCATGAACCTTTTAAACAGgtgcgcagaactagctacagcctaattaggcttaaatttgtttaggtccctatataatacatgctcgtttgttgatgttctgttttgttgaataggaggg