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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATACTCAAGAAACCCATTACAAAGAGGGCTCTTAAAGCATCTGGCCAGTCGGATTTCTCTGGGAATGCTTCCAAAGACCTGCTACTAATGCATAAAgtagtcatttctttctatgcactagtcctttcctgcatatcagcttaagtaattcgtttttttttttttttttgcctttgtgttcgtgttaatattatttctgtttgtgtttag

Basic information

species Arabidopsis thaliana
transcript AT1G16710.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 12
AGGAATACTCAAGAAACCCATTACAAAGAGGGCTCTTAAAGCATCTGGCCAGTCGGATTTCTCTGGGAATGCTTCCAAAGACCTGCTACTAATGCATAAAgtagt----catttctttctatgcactagtcctttcctgcatatcagcttaagtaattcgtttttttttttttttttgcctttgtgttcgt-gttaatattatttctgtttgtgtttag
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AGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTGAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCTCAAAAGACCTTCTCCTAATGCACAAAgtaatttgccattttgatctttgaacatgttattgttcatttgttcttttgggcaaatgaagtccagtgctaatcatgtttttgaatttgttgcatatgt-------------------