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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCGgttagtatacattctttgttggctctcacaagtaaagaaacagcttatgattccacattatcctcctcatcagggaatctaaacgtccatatattcaaatgttttcatttttgttggttgtgaaag

Basic information

species Arabidopsis thaliana
transcript AT1G13320.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: PP1S214_34V6.1 (Physcomitrella patens), 5'ss of exon 11
--TTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCGgttagtatacattctttgttggctctcacaagtaaagaaacagcttatgattccacattatcctcctcatcagggaatctaaacgtccatatattcaaatgttttcatttttgttggttgtgaaag
  ||||||||||||| |||||||| ||||||||| |||||||  | |||||||| || ||          | | ||   || |      ||  |     |       || | | | ||   | | || |    | || ||    |  ||  |  | |  | |  ||||| | ||  ||               
GGTTCCAAACATCAAGTTTAACGTCGCCAAAATGCTGCAATCCATGATTCCGATTGTTGATT------CCACTgtaagctcgtcaccatcttgcgtgcatttcccttcatcgtctaat---aaagtaacacgattattagaaggtgcaagagcgcctgcagt--aatgtgtgcagctt---------------

upper sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: PP1S117_137V6.1 (Physcomitrella patens), 5'ss of exon 11
--TTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCGgttagtatacattctttgttggctctcacaagtaaagaaacagcttatgattccacattatcctcctcatcagggaatctaaacgtccatatattcaaatgttttcatttttgttggttgtgaaag
  |||||||||||||||||||||| ||||||||| | |||||| | ||||| ||||| ||     | || |||  |||  | || ||   ||  |   |    |  | || |  |  | || ||  |   ||   || | | |||    |  |  ||    | || || |                       
GGTTCCAAACATCAAATTTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAgtaagtccacaa-cattcttccttcctatttgctt-gtgatagttgttactaccgcaccaat-tcgatataatgaaatggtgatattaatgacgttaagtgct-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116425639|gb|EG468231.1|EG468231
EST:     TTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCG                         GTTGTGGAGAACATGATACGGCCATGCTTGGTGGGAGCTAAGTGAAGACCC
genomic: TTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCGgttagtatac ... gttgtgaaagGTTGTGGAGAACATGATACGGCCATGCTTGGTGG-AGCTAAGTGAAGACCC