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ATGCGGCTTGCCCACAAATTTTGATGCCACATACTGTTATGCACTTGGTTATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactccaccatttccactaaaatctgttttccatctgtgatcataatagcctttggtaaactagtatgtgcttagaatgagatgagttaacttattggcgcag
species | Arabidopsis thaliana |
transcript | AT1G12000.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCEST: gi|164171411|gb|EL978750.1|EL978750
genomic: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGC
EST: CTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGTTEST: gi|86088437|gb|DR384196.1|DR384196
genomic: CTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCT
EST: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGGAAGAATGGACTGTAGGTGGGACTGCEST: gi|86060419|gb|DR356176.1|DR356176
genomic: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGT-GGAAGAATGGACTGTAGGTGGGACTGC
EST: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCTEST: gi|86060418|gb|DR356175.1|DR356175
genomic: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCT
EST: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCTEST: gi|163973150|gb|ES211802.1|ES211802
genomic: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCT
EST: GGCGCTGGTAGTTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACEST: gi|164064828|gb|ES107014.1|ES107014
genomic: GGCGCTGG-AG-TACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGAC
EST: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCTEST: gi|125026332|gb|EL098601.1|EL098601
genomic: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCT
EST: CCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAEST: gi|116438054|gb|EG480646.1|EG480646
genomic: CCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAA
EST: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCEST: gi|124737342|gb|EH828744.1|EH828744
genomic: ATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGC
EST: CCTCAACAGTGGGAAGACCGGACTAATTTCTTCG GTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCT
genomic: CCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactc ... attggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCGGCTTGCCCACAAATTTTGATGCCACATACTGTTATGCACTTGGTTATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGgtttgtactccaccatttccactaaaatctgttttccatctgtgatcataatagcctttggtaaactagtatgtgcttagaatgagatgagttaacttattggcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA