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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGCAAGgtacagttcccttatttttcttgttgggcctattaagagatctaacatatgtagtatgctccgttaagttgttgacatgttgcgttgtgttcatgattgg...

Basic information

species Arabidopsis thaliana
transcript AT1G09840.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G138676_T05 (Zea mays), 5'ss of exon 11
GAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGCAAGgtacagttcccttattt-----ttcttgttg--ggcctattaagagatctaacatatgtagtatgctccgttaagttgttgacatgttgcgttgtgttcatgattgg-----------------------------------------
|| || ||||| || || || || |||||||| || ||||||||||||||||| |||||||| || || || || || || |||||||| | | | |||||||   |     || |      |   |||||     || | |  | ||||    | |    ||   |  |   | |||   |  |          |||    |||||                                         
GAGGCCTGTATGCACCCTTTCTTCGATGAGCTGAGAGACCCAAACACTCGTCTACCCAATGGTCGGCCTCTGCCGCCTCTCTTCAACTTCAGATCTCAAGgtagcataattgtactgagacatcagtgttgctattctgtcagtaaatcttctgt-taccttaacatgggcatacttgagaatttaacctagctagtttcaaattggattctcagctaaaactgatcagatgtttgcaatactgacag

upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 11
GAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGCAAGgtacagttcccttatttttcttg--ttgggcctattaagagatctaacatatgtagtat-gctccgttaagttgttgaca-tgttgcgttgtgttcatgattgg
|||||||| || ||||| || ||||||||  | |||||||||||||| || ||||| ||||| ||||||||||||||||| || || |||||||| || |||    ||   |  ||| || |   |  |  | ||  |    |  |   ||| | | || |||   || |      | ||    ||  ||   ||||  |    
GAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaagtagtttctcatagatcagcacaatctattagtgaagtttatttggaatagctttatttaaagccagccaacaatggatttgtttcacta----

upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 12
GAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGCAAGgtacagttcccttatttttcttg--ttgggcctattaagagatctaacatatgtagtatgctccgttaagttgttgacatgttgcgttgtgttcatgattgg
|||||||| || ||||| || ||||||||  | |||||||||||||| || ||||| ||||  ||||||||||||||||| || || |||||||| || |||    ||   |  ||| || |   |  |  | ||| |    |  |   ||| | | ||       ||    |   |||   ||  ||   ||||  |    
GAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaagtactttctcatagatcagcacaatttattagtgaagtttatttggaatagctttatataaagccaacaa--tggatttatttcactacaca

upper sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 11
GAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGCAAGgtacagttcccttatttttcttgttgggcctattaagagatctaacatatgtagtatgctccgttaagttgttgacatgttgcgttgtgttcatgattgg----
|||||||| ||||| || || ||||||||| | |||||||| | |||||||||||| |||||||| || |||||||| || || || || ||||| |||||||   ||    |  | |   | |    | |||  |    |     | |  || |||  ||| ||| || | |||    || |      ||  | |||      
GAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACTCGTCTTCCTAATGGCCGTCCTCTTCCTCCCCTCTTTAATTTCAAACCTCAAGgtaagtttgatctgatctg--tatccaccttatctacttttgaggaaca-ataatattgtcctttaggt-gatgatgattttcagaaatttagtaattttatga