Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGATGAAGGAGGAGATGATTCCGATTCTGAATCTAAGGCCGAGGAGACCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctaccacaatatcacttggagaaatttcactcatccataattttgttgttttccttgagttgtggttaaaactgcgtgatttggttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G09210.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164192205|gb|ES097903.1|ES097903
EST:     CCACCGCTCAT                         GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
genomic: CCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
EST: gi|116412926|gb|EG455518.1|EG455518
EST:     CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCAT                         GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAATCT
genomic: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
EST: gi|164232663|gb|ES108837.1|ES108837
EST:     CCAAATCAGAAGATAGCGAGG-AACCTCTGAGAAAGACGCCACCGCTCAT                         GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAG
genomic: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAG
EST: gi|86078431|gb|DR374188.1|DR374188
EST:     CCAAATCAGAAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCAT                         GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
genomic: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT
EST: gi|116412928|gb|EG455520.1|EG455520
EST:     CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCAT                         GATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAATCT
genomic: CCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATgtatgctacc ... ggttttgcagGATGAGCTATAGGTGAAAGGTTGAAGATTTGAAGACCAAAGTTTTCAGTCT