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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGgtaaattttcaataataagaagaaaaatatactttaaattcactaaagaaattccaatatgaaaattgaaaaaaattatttgactatgtttag

Basic information

species Arabidopsis thaliana
transcript AT1G08930.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124855455|gb|EH939892.1|EH939892
EST:     GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCAACAATTATG                         GTTCCAAAAGCAATGCTG
genomic: GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCA-CAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTG
EST: gi|124984782|gb|EL057415.1|EL057415
EST:     AGGAGGATTTCCAAGTGCTATTGGCACAGTCCGTAATAGCCACAATTATG                         GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAG-AGA
genomic: AGGAGGATTTCCAAGTGCTATTGGCACA-TCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGA
EST: gi|125276996|gb|EL291081.1|EL291081
EST:     AAGGAGGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG                         GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGA
genomic: AAGGAGGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGA
EST: gi|124905191|gb|EH979271.1|EH979271
EST:     GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG                         GTACCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAA
genomic: GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAA
EST: gi|124729306|gb|EH820708.1|EH820708
EST:     TCCGTAATAGCCACAATTATG                         GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGA
genomic: TCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGA
EST: gi|164113043|gb|ES099765.1|ES099765
EST:     ACATCCGTAATAGCCACAATTATG                         GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAG
genomic: ACATCCGTAATAGCCACAATTATGgtaaattttc ... ctatgtttagGTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAG