Sequence
atgc intronic sequence ATGC exonic sequenceATCATTTTTCTGGAAACACTATGCAATGATGAGCGCATTATTGAAAGAAACATACGTCTAAAAATCCAGCAAAGTCCTGACTATTCAGAAGAgtactatgctcgctctataactaatattttctcgtcctctttcacgggtcaactgagtttatgctactctgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G07110.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 12
ATCATTTTTCTGGAAACACTATGCAATGATGAGCGCATTATTGAAAGAAACATACGTCTAAAAATCCAGCAAAGTCCTGACTATTCAGAAGAgtactatgctcgctctataactaatattttctcgtcctctttcacgggtcaactgagtttatgctactctgcag
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ATTATATTTTTGGAGACAATATGTAATGATCCAAACATAATTGAAAGAAACATACGGCTGAAGATCCAACAAAGTCCAGACTATGCTGAACAgtgagtttcccagcattgaccctttattagatagaagtaaattgctgcctgaatc-gtgtg-gaaatgttgcag
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 12
ATCATTTTTCTGGAAACACTATGCAATGATGAGCGCATTATTGAAAGAAACATACGTCTAAAAATCCAGCAAAGTCCTGACTATTCAGAAGAgtactatgctcgctctataactaatattttctcgtcctctttcacgggtcaactgagtttatgctac-tctgcag------------------
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ATCATTTTTCTGGAAACAATATGCAATGATGTAGACATAATTGAGAGGAATATTCGCTTTAAAATTCAGCAAAGTCCTGACTATGCAGAAGTgta--atgtttccttttaaaccaacgacatcttatc----ttaatgagtatatggaattgtagatacatatacaattagcttttcttttgcag
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 12
ATCATTTTTCTGGAAACACTATGCAATGATGAGCGCATTATTGAAAGAAACATACGTCTAAAAATCCAGCAAAGTCCTGACTATTCAGAAGAgtactatgctcgctctataactaatattttctcgtcctctttcacgg--gtcaactgagt---ttatgctactctgcag
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ATTATTTTTTTGGAAACAATCTGCAATGATGAGCGCATTATTGAAAGAAATATACGTCTTAAAATTCAACAAAGCCCTGACTATGCAGAAGAgtatggt-tgctctctgaaaccattagtcatt-atcttaataaaccattatgaacttagtaactggtattgttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125169846|gb|EL193642.1|EL193642EST: GAAAGAAACATACGTCTAAAAATCCAGCAAAGTCCTGACTATTCAGAAGA AATGGATTTTGAAG
genomic: GAAAGAAACATACGTCTAAAAATCCAGCAAAGTCCTGACTATTCAGAAGAgtactatgct ... tactctgcagAATGGATTTTGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCATTTTTCTGGAAACACTATGCAATGATGAGCGCATTATTGAAAGAAACATACGTCTAAAAATCCAGCAAAGTCCTGACTATTCAGAAGAgtactatgctcgctctataactaatattttctcgtcctctttcacgggtcaactgagtttatgctactctgcag
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG