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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgtaattaatcctaaatcgtaatgtgaaaaacttctcggcgctaaaatgttgacttgtattgatatttgctcaatatttatctcag

Basic information

species Arabidopsis thaliana
transcript AT1G04140.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os02g18820.2 (Oryza sativa), 5'ss of exon 14
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgtaattaatcctaaatcgtaatgtgaaaaacttctcggcgctaaaatgttgacttgtattgat--atttgctca-atatttatctcag
 || ||||| ||||| ||||| ||||| ||  | || |||||||| || ||||| |||||||||||||| ||||| || |||||||| ||||| || ||||||| ||     ||||   |      || | | | |  |      || ||  ||| |  | ||  ||   |||| | ||||   ||||
GGACATGGAGCTGGTAAGAGTTCTTCCTAGTGCTGAAGATGAAGTAAACGTTGCATGCTTTCATCCTTCCCCTGGAGGTGGTCTTGTTTATGGGACCAAGgtaaatagc---aaattagatcaatcaacagtacacaacat----atatttgctt-tgctaattcatgcactcacacatttgcatcag

upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 5'ss of exon 13
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgtaattaatcctaaatcgtaatgtgaaaaacttctcggcgctaaaatgttgacttgtattgatatttgctcaatatttatctcag
||| ||||| || || |||||  | || ||  | || |||||||| ||||| || || ||||||||||| ||||| | ||||||||| ||||| || ||||| | | |      |    ||| | ||| |      ||      ||| |||   | |  ||||  ||        |  ||| |||
AGACATGGAGCTTGTAAGAGTTATCCCTAGTGCTGAAGATGAAGTCAATGTCGCATGTTTTCATCCTTCCCCTGGTGCAGGTCTTGTTTATGGGACTAAGgtgagtgacaagttaggtcaatatcaaagat-----ggaat--gaatattggtatat-ctgatgcttatgt----tgaatcacag

upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G007229_T01 (Zea mays), 5'ss of exon 13
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgtaattaatcctaaatcgtaatgtgaaaaacttctcggcgctaaaatgttgacttgtattgatatttgctcaatatttatctcag
||||||||| || |||||||| ||||| ||| | || ||||||||||||||||| |||||||||||||| || || || || ||||| ||||| || |||||   ||       ||   |||    |||       ||||    | || | |   |  || ||  | |   | ||| ||      
AGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAAGATGAAGTTAATGTTGCATGCTTTCATCCTTCACCAGGAGGTGGCCTTGTTTATGGCACTAAGgtcggtagaaaactatt-caataaacaaagaggtatggcg---gattgctaag--gctttcattctggtgaactatatag-----

upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgtaattaatcctaaatcgtaatgtgaaaaacttctcggcgctaaaatgttgacttgtattgatatttgctcaatatttatctcag
||||||||| || |||||||| ||||| ||  | || |||||||| |||||||| |||||||||||||  || || || || ||||| ||||| || |||||   ||     ||||  |    | || ||         | |  | || | |  ||  |  ||  | |   | ||| ||      
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagc---aaattattcaataaacaaaaaggta-tggtggattgctaa--tgcttaaattgtggtgaattatatag-----

upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G353548_T04 (Zea mays), 5'ss of exon 13
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgtaattaat--cctaaatcgtaatgtgaaaaacttctcggcgctaaaatg-ttgacttgtattgatatttgctcaatatttatctcag
||||||||| || |||||||| ||||| ||  | || |||||||| |||||||| |||||||||||||  || || || || ||||| ||||| || |||||   ||      ||     |||    |||    |   ||      |||| || | ||||  |||  | |     |            
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaattattcaataaacaaaaaggtatggtggattgctaatgcttaaattgtggtgaattatataggaag----------

upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA03G32620.2 (Glycine max), 5'ss of exon 11
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgta-attaatcct-----aaatcgtaatgtgaaaaacttctcggcgctaaaatgttgacttgtattgatatttgctcaatatttatctcag-----------
|||||||||||| || || || ||||| ||  |||| || || || ||||| || ||||||||||||| | |||||||||| || || |||||||||||||||  ||  | ||     | | ||     ||    |    |  || ||  |   |  |||  |     |||||  |  ||| |  | |              
AGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGgtatgttgttgctggggcagaccgaccaatggggtatggtttagcactttagcttacactatttaaattatttaattgataatcttttgcatgtggttgtag

upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA19G35370.1 (Glycine max), 5'ss of exon 12
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgta-attaatcctaaatcgtaatgtgaaaaacttctcggcgctaaaatgttgacttgtattgat-atttgctcaatatttatctcag-----------
|||||||||||| || || || ||||| ||  |||| ||||| || ||||| || ||||||||||||| | | || ||||| || || |||||||||||||||   |  | ||     |     ||    |    |  || ||  |   ||   || | |  || ||||  |  ||| |  | |              
AGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTGCCGGAGGAGGACTAGTTTATGGAACAAAGgtatggtgttgctgggcagaccaatggggtatggtttagcactttagctttacattatttaaattatttaattgataatcttttgcatgtgattttag

upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgt----aattaatcctaaatcgtaatgtgaaaaactt--------ctcggcgctaa-aatgttgacttgtattgatattt---gctca-atatttatctcag--------------------------
|||||||||||| || ||||| ||||| ||  | || ||||| || ||||| ||||||||||||||||  ||||| ||||||||||| |||||||| |||||    |  | || |    | | ||| |    |  ||        |||  |   || ||  | || |  |||| || |||   ||| | ||  |||  || |                          
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag

upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: PP1S58_234V6.1 (Physcomitrella patens), 5'ss of exon 13
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgtaattaatcctaaatcgtaatgtgaaaaacttctcggcgctaaaatgt-tgacttgta--ttgatatttgctcaatatt---tatctcag----------
||||||||| || |||||||||||||| ||  | ||||||||||| ||||| || || ||||||||      ||| || |||||||| |||||||||||||| | |  | ||     ||  || ||  |   | | |         ||  | | |||||  |  ||| |   | || |||   ||||| ||          
AGATATGGAGCTTGTGAGAGTACTTCCCAGTGCTGAGGATGAAGTGAATGTGGCGTGTTTTCATCCCCAAGTTGGTGGCGGTCTTGTATATGGAACAAAGgtgagttgttcttctgtgttctg-gactagtatttagatatatgtgtgaatcagttgtagttctatactgtttgaagattcgttatctgagataaagtgtt