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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaataagcaatcatctattcaaagctcaaatagttcaaaaaagaacaggccataatattatatcagacgccattgatgatgtactttgaacag

Basic information

species Arabidopsis thaliana
transcript AT5G62240.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116430545|gb|EG473137.1|EG473137
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTTTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430547|gb|EG473139.1|EG473139
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTTTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430546|gb|EG473138.1|EG473138
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430548|gb|EG473140.1|EG473140
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430549|gb|EG473141.1|EG473141
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430536|gb|EG473128.1|EG473128
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430559|gb|EG473151.1|EG473151
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430537|gb|EG473129.1|EG473129
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430560|gb|EG473152.1|EG473152
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430541|gb|EG473133.1|EG473133
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGTCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430542|gb|EG473134.1|EG473134
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430555|gb|EG473147.1|EG473147
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430540|gb|EG473132.1|EG473132
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGTCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430552|gb|EG473144.1|EG473144
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430551|gb|EG473143.1|EG473143
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430556|gb|EG473148.1|EG473148
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430558|gb|EG473150.1|EG473150
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430544|gb|EG473136.1|EG473136
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430554|gb|EG473146.1|EG473146
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
EST: gi|116430538|gb|EG473130.1|EG473130
EST:     ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG                         GAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT
genomic: ATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaat ... ctttgaacagGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCAAGGAACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAGgtaaactaataagcaatcatctattcaaagctcaaatagttcaaaaaagaacaggccataatattatatcagacgccattgatgatgtactttgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA