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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGgtaagttctgcttcttcttgctgaaatggttttttctttgtagatttctataaaaccgaaaaatttgtcttcttttgttgtgtgtggagcag

Basic information

species Arabidopsis thaliana
transcript AT5G60640.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054026|gb|DR349783.1|DR349783
EST:     GGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCG                         ATTACTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAGG
genomic: GGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGgtaagttctg ... tgtggagcagATTACTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAGG
EST: gi|86074845|gb|DR370602.1|DR370602
EST:     GGTTCCCTACCATTCTCTTCTT-CCTGCGGGCAACAAGACTTCAGAGCCG                         ATTACTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAGG
genomic: GGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGgtaagttctg ... tgtggagcagATTACTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAGG
EST: gi|86054033|gb|DR349790.1|DR349790
EST:     GGTTCCCTACCATTCTCTTCTTCCCTGCGG-CAACAAGACTTCAGAGCCG                         ATTACTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAGG
genomic: GGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGgtaagttctg ... tgtggagcagATTACTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAGG
EST: gi|124852892|gb|EH937329.1|EH937329
EST:     CAACAAGACTTCAGAGCCG                         ATTACTTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAG
genomic: CAACAAGACTTCAGAGCCGgtaagttctg ... tgtggagcagATTAC-TGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAG
EST: gi|125185674|gb|EL200628.1|EL200628
EST:     TCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCG                         ATTACTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAGG
genomic: TCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGgtaagttctg ... tgtggagcagATTACTGTAGATACAGACCGCACTGTGGTTGCATTTTACAAGTTCTTAAGG