Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCATTGGCTGCATAGTTGACCGCCATTTGCAAGAAGGAGATGTTGTTCTTTTTAACAGGCAACCGAGTCTGCATCGGATGTCTATCATGTGTCACAGGgtcagtactggtttataatgcttagtcataattttctcttgccctcatagcaatcctaattttacatatgttgtcccatag

Basic information

species Arabidopsis thaliana
transcript AT5G60040.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G080176_T01 (Zea mays), 5'ss of exon 10
GGCCATTGGCTGCATAGTTGACCGCCATTTGCAAGAAGGAGATGTTGTTCTTTTTAACAGGCAACCGAGTCTGCATCGGATGTCTATCATGTGTCACAGGgt--cagtactggtttataatgcttagtcataattttctcttgccctcatagc--aatcctaattttacatatgttgtcccatag
      ||| || ||||||||  | |||||  |||| ||||||||||| || ||||| || || ||||| |||||| | ||||| || ||||||||||||||  || |      ||||       |   |||  |    | |  | |||      |||  |   |||   |||  |    || ||
AAAGTGTGGATGTATAGTTGAAAGACATTTAGAAGATGGAGATGTTGTCCTCTTTAATAGACAGCCGAGCCTGCATAGAATGTCAATTATGTGTCACAGGgtatcaatgtctccttatttcataaaagtatacatcaagcatttcttcacctttgaatatttgcttt---tatacttgagcacag

upper sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 8
GGCCATTGGCTGCATAGTTGACCGCCATTTGCAAGAAGGAGATGTTGTTCTTTTTAACAGGCAACCGAGTCTGCATCGGATGTCTATCATGTGTCACAGGgtcagtact---ggtttataatgcttagtcataattttctcttgccc--tcatagcaat-cctaattttacatatgttgtcccatag
|   |||||    || ||||| ||||||||| |||| |||||  |||||||||| || || || || ||  |||||||||||||||| |||||||||||||| | | ||       |  ||||   | |  | |     | |   ||  |   |  |||   ||||||| || ||   |        
GAGGATTGGTGATATTGTTGATCGCCATTTGGAAGATGGAGACATTGTTCTTTTCAATAGACAGCCAAGCTTGCATCGGATGTCTATAATGTGTCACAGGgtaatttcttaaaaagtgaaatgtagaattgtgagagattttgatccaattgcattaatatttaatttttcacatacag--------

upper sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv06s0004g03740.t01 (Vitis vinifera), 5'ss of exon 10
GGCCATTGGCTGCATAGTTGACCGCCATTTGCAAGAAGGAGATGTTGTTCTTTTTAACAGGCAACCGAGTCTGCATCGGATGTCTATCATGTGTCACAGGgtcagta---ctggtttataatgct----tagtcataattttctcttgccctcatagcaatc--ctaattttacatatgttgtcccatag
|     ||| | ||||||||| || || ||| |||| || |||||||||||||||||||| ||||| ||| ||||||||||||| |||||||| || ||||| | ||   ||| |||  | ||      |||  || ||||    ||    |  || || |    ||| ||| | ||| |   |   |||
GAAATATGGTTACATAGTTGAGCGTCACTTGGAAGATGGCGATGTTGTTCTTTTTAACAGACAACCAAGTTTGCATCGGATGTCAATCATGTGCCATAGGgtgattaaaactgattttaagtgtacaaataggtatcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtag

upper sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: PP1S26_192V6.1 (Physcomitrella patens), 5'ss of exon 10
-GGCCATTGGCTGCATAGTTGACCGCCATTTGCAAGAAGGAGATGTTGTTCTTTTTAACAGGCAACCGAGTCTGCATCGGATGTCTATCATGTGTCACAGGgtcag-tactggtttataatgctta-gtcataattttctcttgccctcatagcaatc--ctaattttacatatgttgtcccatag-----------------------------------------------------------
     |  ||   ||| || ||  | ||| || |||| |||||| |||| ||||||||| ||||||| ||||||||  |||||||||||||||  |||||||| || | ||  ||  |   | |||  | ||||||||  | | |  |   |  |  |  |||  |  |   |  |||   | ||                                                            
CAAATAC-GGTGACATCGTAGAAAGGCATCTGGAAGACGGAGATATTGTACTTTTTAACCGGCAACCTAGTCTGCACAGGATGTCTATCATGTCACACAGGgtaagatccttattcttttagattacatgataattttaaccttctttggaaatatgctgctagatggatcaacattgcatcgtactggatgtatttttgtccttcctgccttgttatttctgttaacaccggcttttattacag

upper sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: EFJ13293 (Selaginella moellendorffii), 5'ss of exon 10
-GGCCATTGGCTGCATAGTTGACCGCCATTTGCAAGAAGGAGATGTTGTTCTTTTTAACAGGCAACCGAGTCTGCATCGGATGTCTATCATGTGTCACAGGgtcagtactggtttataatgcttagtcataattttctcttgccctcatagcaatcctaattttacatatgttgtcccatag
     || ||     | || ||  | ||| || | || || ||  |||||||||||||  |||| || ||| ||||||| |||||||| ||||||||||||||  |||   |||| ||||  || ||  |   || |  ||| | |  | | |                             
CAAGTAT-GGAGATGTTGTGGAAAGACATCTGGAGGATGGTGACATTGTTCTTTTTAATCGGCAGCCTAGTTTGCATCGAATGTCTATAATGTGTCACAGGgtatgta---gtttctaat--tttgttttttcttccgtttgacatgcttgaag----------------------------

upper sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: EFJ24638 (Selaginella moellendorffii), 5'ss of exon 10
-GGCCATTGGCTGCATAGTTGACCGCCATTTGCAAGAAGGAGATGTTGTTCTTTTTAACAGGCAACCGAGTCTGCATCGGATGTCTATCATGTGTCACAGGgtcagtactggtttataatgcttagtcataattttctcttgccctcatagcaatcctaattttacatatgttgtcccatag
     || ||     | || ||  | ||| || | || || ||  |||||||||||||  |||| || ||| ||||||| |||||||| ||||||||||||||  |||   |||| | |   ||  |     |||  |||| |  |        |   |                       
CAAGTAT-GGAGATGTTGTGGAAAGACATCTGGAGGATGGTGACATTGTTCTTTTTAATCGGCAGCCTAGTTTGCATCGAATGTCTATAATGTGTCACAGGgtacgta---gttttttacttttgttt----tttcttcttacgtttgacatgtttgaag----------------------