Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCTTCCAGAGAGAAAAATATTAGATGGAATTTCCTTTGTCGTACCGGCAGGAAAAAGTGTGGCAATCGTTGGTACTAGCGGGAGCGgtaattcctaaacctcttctgtttaagcatctaagttctgtgtaaatttgttattctggtatactgttgcaaatcttattatttgttctatggcag

Basic information

species Arabidopsis thaliana
transcript AT5G58270.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58270.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os06g03770.1 (Oryza sativa), 5'ss of exon 13
TTACCTTCCAGAGAGAAAAATATTAGATGGAATTTCCTTTGTCGTACCGGCAGGAAAAAGTGTGGCAATCGTTGGTACTAGCGGGAGCGgtaattcctaaacctcttctgtttaa--gcatctaagttctgtgtaaatttgtt--attctggtatactgttgcaaatcttattatttgttctat-ggcag----
 ||| | ||||| || || ||  |  | ||     | ||    ||||| |||||||| ||||| ||||||||||| ||||| || ||||||||  | |     | || |||  ||  |||||||     ||| ||| ||   |  |   | | |  |   |   | |  |   ||  ||  |||  |||     
GTACGTACCAGAAAGGAAGATTCTTAAGGGTGCCACGTTCACTGTACCTGCAGGAAAGAGTGTTGCAATCGTTGGAACTAGTGGCAGCGgtaaaactt----tttttttgtcaaattgcatctaccaattgtttaacttgactcaaaagttgaaggcgtgtatgagttctcccatg-gtcgtatcagcaaattg

upper sequence: AT5G58270.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 15
TTACCTTCCAGAGAGAAAAATATTAGATGGAATTTCCTTTGTCGTACCGGCAGGAAAAAGTGTGGCAATCGTTGGTACTAGCGGGAGCGgta-attcctaaac---------ctcttctgtttaagcatctaagt-tctgtgtaaatttg--ttattctggtatactgttgcaaatcttattatttgttctatggcag
 |||||  |||||||||||||  | |||||||| || ||||| ||||| || |||||||||||||| || ||||| || || || || ||||     |||||           || ||| ||||   |||||  | ||| | ||||||||  |     |  | |    ||||| |||| |  ||||| |         
CTACCTGACAGAGAGAAAAATTCTTGATGGAATATCTTTTGTTGTACCAGCTGGAAAAAGTGTGGCTATTGTTGGAACCAGTGGCAGTGgtatggatctaaatgcatcagaattcctctctttatctatctatctatctatctaaatttgcatagcaattttttttccttgcatatctcagcatttgat---------