1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAGCTTGGGAAGCAAATAGAAGAAGGAAAAGCTGATTTTGAGTATCTTGAGAAGAAAGCTAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAGgtacaagtttcttgctattaattctggttttgtttcgttaaacacgaaaaacacacaatgatcgatgtcttttgaaacgaaatctgcag
species | Arabidopsis thaliana |
transcript | AT5G57655.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAAAGCTAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAG GAACTCGCTGAGATGATCTTCCAATCTGCAATGTAAGAAGAAGAACAAGAAEST: gi|86084623|gb|DR380382.1|DR380382
genomic: AGAAGAAAGCTAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAGgtacaagttt ... aaatctgcagGAACTCGCTGAGATGATTTTCCAATCTGCAATGTAAGAAGAAGAACAAGAA
EST: AGAAGAAAGCTAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAG GAACTCGCTGAGATGATCTTCCAATCTGCAATGTAAGAAGAAGAACAAGAAEST: gi|86084312|gb|DR380071.1|DR380071
genomic: AGAAGAAAGCTAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAGgtacaagttt ... aaatctgcagGAACTCGCTGAGATGATTTTCCAATCTGCAATGTAAGAAGAAGAACAAGAA
EST: AGAAGAAAGCTAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAG GAACTCGCTGAGATGATCTTCCAATCTGCAATGTAAGAAGAAGAACAAGAAEST: gi|125274200|gb|EL288285.1|EL288285
genomic: AGAAGAAAGCTAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAGgtacaagttt ... aaatctgcagGAACTCGCTGAGATGATTTTCCAATCTGCAATGTAAGAAGAAGAACAAGAA
EST: AACCAAGGGTTTCTTCTGCTAAACAG GAACTCGCTGAGATGATTTTCCAATCTGCAATGTAAGAAGAAGAACAAGAA
genomic: AACCAAAGGTTTCTTCTGCTAAACAGgtacaagttt ... aaatctgcagGAACTCGCTGAGATGATTTTCCAATCTGCAATGTAAGAAGAAGAACAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCTTGGGAAGCAAATAGAAGAAGGAAAAGCTGATTTTGAGTATCTTGAGAAGAAAGCTAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAGgtacaagtttcttgctattaattctggttttgtttcgttaaacacgaaaaacacacaatgatcgatgtcttttgaaacgaaatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA