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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTCACATTTGATAAGGTTTTTGCGCCGACTGCATCACAAGAAGATGTCTTCACTGAGATTTCTCAACTTGTTCAAAGTGCTCTCGATGGTTACAAGgtaactaaatctgcaaatggcaaaaagtactatgtgcgtttcactgtttgttggaataactaagctgatagaatccattttatag

Basic information

species Arabidopsis thaliana
transcript AT5G54670.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G54670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA12G34330.1 (Glycine max), 5'ss of exon 10
TGCTTTCACATTTGATAAGGTTTTTGCGCCGACTGCATCACAAGAAGATGTCTTCACTGAGATTTCTCAACTTGTTCAAAGTGCTCTCGATGGTTACAAGgtaact-----aaatctgcaa-atggcaaaaagtactatgtgcgtttcactgtttg-ttggaataactaagctgatag--aatccattttatag------
| ||||||||| |||||| |||||||| ||   ||||||||||||||| || || |  || ||||| || ||||| ||||||||||| |||||||| |||||||       |    |  |  ||  ||||   || ||| ||| |   | ||  |   || ||  |  |   ||||    | ||   | || |       
TTCTTTCACATATGATAAAGTTTTTGCACCTGATGCATCACAAGAAGAAGTTTTTATCGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTATAAGgtaatcttttgatggttatatcatttcaaattatattatatgcttactattgcataactgcaagcaacagaatgatttctagtcagatatagaacacaaa

upper sequence: AT5G54670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA13G36230.2 (Glycine max), 5'ss of exon 11
TGCTTTCACATTTGATAAGGTTTTTGCGCCGACTGCATCACAAGAAGATGTCTTCACTGAGATTTCTCAACTTGTTCAAAGTGCTCTCGATGGTTACAAGgtaac----taaatctgcaaatgg--caaaaagtactatgt-gcgtttcactgtttgttggaataactaagctgatagaatccattttatag--------
| ||||||||| |||||| |||||||| ||   | ||||||||||||| || || | ||| ||||| || ||||| ||||||||||| |||||||| |||||||     ||| |  |    |    |      ||  || |    ||  |    || |    |  | |     | |   | | |||  | ||        
TTCTTTCACATATGATAAAGTTTTTGCACCTGATACATCACAAGAAGAAGTTTTTATTGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTATAAGgtaatctcttaagttcgtcttttattccttctatatcatttcaaattatatatattatacatactattgcatagctgcgaccaattgaacagttgctagt

upper sequence: AT5G54670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA06G41600.1 (Glycine max), 5'ss of exon 10
TGCTTTCACATTTGATAAGGTTTTTGCGCCGACTGCATCACAAGAAGATGTCTTCACTGAGATTTCTCAACTTGTTCAAAGTGCTCTCGATGGTTACAAGgtaact-aaatctgcaaatggcaa----aaagtactatgtgcgtttcactgtttgt-tggaataactaagctgatagaatccattttatag---------
|||||| ||||||||||| |||||| | ||    |||||||||||||| || ||    || ||||| || ||||| ||||||||||| |||||||||||||||| | |||  | |   || ||     |||| ||||| |   |   |   |   |    ||  |  || |   |   |  |  ||  |||         
TGCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTGTGGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTACAAGgtaatttaaaagttcttctgtcatctctaaagcactatttatttaaaatcatcaatacataaggatcaaccatttcacacactattactagtcaattttg

upper sequence: AT5G54670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA12G16580.1 (Glycine max), 5'ss of exon 11
TGCTTTCACATTTGATAAGGTTTTTGCGCCGACTGCATCACAAGAAGATGTCTTCACTGAGATTTCTCAACTTGTTCAAAGTGCTCTCGATGGTTACAAGgtaact----aaatctgcaaatggcaa-aaagtactatgtgcgtttcactgtttgttggaataactaagctgatagaatccatttta-tag---------
| |||| ||||||||||| |||||| | ||    |||||||||||||| || ||    || ||||| || ||||| ||||||||||| |||||||||||||||| |    |  ||| |      |   |||| |||||     |   |  || | |    ||   | | |   |  |  |  | ||| |||         
TTCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTCTAGAAATTTCACAGCTTGTACAAAGTGCTCTTGATGGTTACAAGgtaatttcaaagttcttctgtcatctctaaagcactattcatttaaaatcgtatatacatatggatcaaccatttaatgcactattactagtcaattttg

upper sequence: AT5G54670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: EFJ36382 (Selaginella moellendorffii), 5'ss of exon 10
TGCTTTCACATTTGATAAGGTTTTTGCGCCGACTGCATCACAAGAAGATGTCTTCACTGAGATTTCTCAACTTGTTCAAAGTGCTCTCGATGGTTACAAGgtaactaaatctgcaaatggcaaaaagtactatgtgcgtttcactgtttgttggaataactaagctgatagaatccattttatag
    ||  | || || || || ||||  ||     |    |||||    || || || || || ||||||||||| ||||||||||| ||||| |||||||| | |||           | |||  |||   | |    |   |   |  |  |||  |||  || |                  
CTTCTTTTCTTTCGACAAAGTGTTTGGTCCTGAAACTGGCCAAGAGAGCGTGTTTACAGAAATATCTCAACTTGTGCAAAGTGCTCTGGATGGATACAAGgtcattaa-----------gaaaagcgtatcttttctact--gccactcatatgaaacacttcgcag------------------

upper sequence: AT5G54670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: EFJ35821 (Selaginella moellendorffii), 5'ss of exon 10
TGCTTTCACATTTGATAAGGTTTTTGCGCCGACTGCATCACAAGAAGATGTCTTCACTGAGATTTCTCAACTTGTTCAAAGTGCTCTCGATGGTTACAAGgtaactaaatctgcaaatggcaaaaagtactatgtgcgtttcactgtttgttggaataactaagctgatagaatccattttatag
    ||  | || || || || ||||  ||     |    |||||    || || || || || ||||||||||| ||||||||||| ||||| |||||||||| |||              |||||     | |   ||  ||||     |   || |  | ||||  |     || ||   ||
CTTCTTTTCTTTCGACAAAGTGTTTGGTCCTGAAACTGGCCAAGAGAGCGTGTTTACAGAAATATCTCAACTTGTGCAAAGTGCTCTGGATGGATACAAGgtaattaag-------------aaaagcg---tatcttttctactgcc-actcatatgatgacgctgtaa-----cacttcgcag