1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGTTACAAGGAGATAAAAGAAACATTGGGAGTGGATGATCCTGCAGAGATAATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAGgtaaacaacacacacaaaactctatttacttcaaataactgataagagaaaactgagtttgtttctcaattctggttgtaag
species | Arabidopsis thaliana |
transcript | AT5G53850.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAG GTCTGGAGGCGEST: gi|124776431|gb|EH866558.1|EH866558
genomic: AATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAGgtaaacaaca ... tggttgtaagGTCTGGAGGCG
EST: CAAGAAGCCGTAGCTGCAAAAGCCGCAG GTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCAEST: gi|86088072|gb|DR383831.1|DR383831
genomic: CAAGAAGCCGTAGCTGCAAAAGCCGCAGgtaaacaaca ... tggttgtaagGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCA
EST: AATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAG GTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCGGAAA
genomic: AATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAGgtaaacaaca ... tggttgtaagGTCTGGAGGCGATTATATCGATTCGACCTGGAAACGCTCCATTACCGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTACAAGGAGATAAAAGAAACATTGGGAGTGGATGATCCTGCAGAGATAATGTTTGTGACAGATGTTTATCAAGAAGCCGTAGCTGCAAAAGCCGCAGgtaaacaacacacacaaaactctatttacttcaaataactgataagagaaaactgagtttgtttctcaattctggttgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC