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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgcaattttttcctatggttcttatgtcctttccctctgcggctctgcctataccttttatttttcatagattttgattcaattgaattttaatctatctctcag

Basic information

species Arabidopsis thaliana
transcript AT5G50950.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA02G01930.1 (Glycine max), 5'ss of exon 11
TGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgcaattttttcctatggttcttatgtcctttccctctgcggctctgcctataccttttatttttcatagattttgattcaattgaattttaatctatctctcag
||||||| | || |||||||| || ||   ||| ||||| || ||||||||||||||||||||||||||| ||          | |  ||| |   |   |   ||   |   | |       | | | | ||| |||  |||| |  | |||  |||      |  |||| ||| |  
TGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTgtaaga----------tcctcatgctgactgactatatttgttacacagtgggctgttttcttgttactttctatagttcattattttatttgggagttgtctagctcac--

upper sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 11
TGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgcaattttttcctatggttcttatgtcctttccctctgcggctctgcctat-accttttatttttcatagattttgattcaattgaattttaatctatctctcag---------------------
||||||| | || ||||||||||||||   ||| ||||| || ||||||||||| ||||| ||||||||| ||     ||  |  |  |   |   | |||         | |  | | |   | | || |  |||  ||||| | |||   ||   |  ||||  ||| |  |||| ||                     
TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcag

upper sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 11
TGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgcaattttttcctatggttcttatgtcctttccctctgcggctctgcctataccttttatttttcatagattttgattcaattgaattttaatctatctctcag----------------------
||||||| | || ||||||||||||||   ||| ||||| || |||||||| |||||||| ||||||||| ||     ||  |  |  |   |   | |||         | || | | |      || |  |||  |||||  ||||   |    |  ||||  ||| |  |||| ||                      
TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGGAGCAGTATCATGCCTgtaagatcctcatgctgactgaatataaatttgttacacaaaccagctgttttcttgtcacttgctatagttcattaatttatttgtcttgcaattggaatttgactctaagccacaactgtattctgtttcag

upper sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 12
TGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgcaattt-tttcctatg-gttcttatgtcctttccct--ctgcggctctgcctataccttttatttttcatagattttgattcaat-tgaattttaatctatctctcag
||||||| | ||||| |||||||||||   ||| ||||| || || ||||| ||||||||||||||||||  |     || | ||||| ||   || ||||| |  |              |   | |  || |  ||  |||   |    || |||||   |  |  ||  ||||| ||    
TGGTCCACGTTGTGGCCTTGGTGAACTCATTCTTCCTGAAAACGAGCCAGGCAGCAGTATTATGCCTgtaaaatcctgatctctttcccatatatttttatgacagtaaaaagatgatattttcacttgcacttgctacatttaggattcatttattcatcctttagctttttctatttcag--

upper sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0060g01700.t01 (Vitis vinifera), 5'ss of exon 9
TGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgcaattttttcctatggttcttatgtcctttcc----ctctgcggctctgcctataccttttatttttcatagattttgattcaattg--aattttaatctatctctcag
 || ||| | ||||| |||||||||||| | || ||||| ||||||||||| |||||||| ||||||||  |      |  |    | ||  || ||   || ||||       |||  |        |  | |||||| ||| |||   |  || | ||||   |  | ||   | | |   ||
CGGCCCACGCTGTGGCCTTGGTGAACTTACACTTCCTGATAATGAACCAGGCAGCAGTATCATGCCTgtgagttctttacctaaaaccattcttttttgttcatttctaatttcctgttgacaaagaaaggctttttatatttaatattctgggagttaattttcatgtatagcttctattcgag

upper sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: EFJ18116 (Selaginella moellendorffii), 5'ss of exon 10
TGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgcaattttttcctatggttcttatgtcctttccctctgcggctctgcctataccttttatttttcatagattttgattcaattgaattttaatctatctctcag
||| ||  | || ||  | || || ||    ||||| ||||||||||| |||||||| |||||||| |||||  ||   ||||||   | | || |  |||    |  || ||    || |                                                          
TGGGCCTCGGTGCGGATTGGGAGAGCTAAAGCTGCCGGAGAATGAACCTGGAAGCAGCATTATGCCGgtatg--tgttgttttttgaaa-gtttttcctgtttcatggctgtgttcttcag----------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116422670|gb|EG465262.1|EG465262
EST:     TTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCT                         GGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
genomic: TTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgc ... tatctctcagGGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
EST: gi|116467405|gb|EG509997.1|EG509997
EST:     TTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCT                         GGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
genomic: TTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgc ... tatctctcagGGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
EST: gi|116428257|gb|EG470849.1|EG470849
EST:     AACCAGGAAGCAGTATTATGCCT                         GGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
genomic: AACCAGGAAGCAGTATTATGCCTgtatgaatgc ... tatctctcagGGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
EST: gi|116456305|gb|EG498897.1|EG498897
EST:     TTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCT                         GGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
genomic: TTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgc ... tatctctcagGGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
EST: gi|116428316|gb|EG470908.1|EG470908
EST:     TTGGTGAACTTTCTCTGCCTGAGGATGAACCAGGAAGCAGTATTATGCCT                         GGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA
genomic: TTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgc ... tatctctcagGGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA