1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAAATGTTGGCTTTGAAGGAAGAGAAAGCAAGTGACTTTCTGGATGCCGTTTCTGAAACCATTAAAACCTTGGAAGGCAGATCCAGACGCTTAAAAGAGgtactcatttctgcctatactcccttttgcattatcatcagagctcagattgtcttagattgtttgcaaataacaaatgaatatttcaaatggttaaagc...
species | Arabidopsis thaliana |
transcript | AT5G49810.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTCTGAAACCATTAAAACCTTGGAAGGCAGATCCAGACGCTTAAAAGAG GTACTACAGAACTCTGGTTGGGAGGTTATCCAACCCTCAGCTGGAATCTCAEST: gi|116467102|gb|EG509694.1|EG509694
genomic: TTTCTGAAACCATTAAAACCTTGGAAGGCAGATCCAGACGCTTAAAAGAGgtactcattt ... attggaacagGTACTACAGAACTCTGGTTGGGAGGTTATCCAACCCTCAGCTGGAATCTCA
EST: TTTCTGAAACCATTAAAACCTTGGAAGGCAGATCCAGACGCTTAAAAGAG GTACTACAGAACTCTGGTTGGGAGGTTATCCAACCCTCAGCTGGAATCTCA
genomic: TTTCTGAAACCATTAAAACCTTGGAAGGCAGATCCAGACGCTTAAAAGAGgtactcattt ... attggaacagGTACTACAGAACTCTGGTTGGGAGGTTATCCAACCCTCAGCTGGAATCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAATGTTGGCTTTGAAGGAAGAGAAAGCAAGTGACTTTCTGGATGCCGTTTCTGAAACCATTAAAACCTTGGAAGGCAGATCCAGACGCTTAAAAGAGgtactcatttctgcctatactcccttttgcattatcatcagagctcagattgtcttagattgtttgcaaataacaaatgaatatttcaaatggttaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatgaa