Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTGGCAACTCCAACAAAAACCTGCTTACAACTTGTTCATGAGTTACTTGTGCCCATCCTAATGGCTCGAAGTGAGAAGAGTTTAACCAGACAAGAGgtaattcccattttgtttgtaaattgatgaatctgacatctcaccaaaatcatgaacttggattcgaattattgcatttagtttgaaatttgctggttttgttatcttcatggctccctaggaatatttattgaagacttgttctatttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G48310.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48310.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv12s0057g01510.t01 (Vitis vinifera), 5'ss of exon 9
GAATGTGGCAACTCCAACAAAAACCTGCTTACAACTTGTTCATGAGTTACTTGTGCCCATCCTAATGGCTCGAAGTGAGAAGAGTTTAACCAGACAAGAGgtaattcccattttgtttgtaaattgatgaatctgacatctcaccaaaatcatgaacttggattcgaattattgcatttagtttgaaatttgctggttttgttatcttcatggctccctaggaatatttattgaagacttgttctatttttgcag
||||||||| ||||| ||||||   |||||| ||||||| ||||| || || |||||| |  ||| |||  | |||||||| |||||||| |||||||||||||  |   | |   |    | || |     || |  | | || |   || | |||     | |  || ||| |    ||     | | ||   ||      |  |                                                
GAATGTGGCCACTCCTACAAAAGATTGCTTAGAACTTGTACATGAATTGCTGGTGCCCGTTATAAAGGCAAGGAGTGAGAAAAGTTTAACTAGACAAGAGgtaagcc---tatcagtacccatttcacatcccttatcttt-acaattctcttaaacggtcctcctcatcattac---cagaaaacagtatgggagtgaaaacaatt------------------------------------------------