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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAAATTGGGAAAGAGTACTTCAACCATAAGAACCTTGAAGAAATTGTTAAAAGCTATCCGTACAAGATAAATCTACCTGAGGACGATGTAGTCAAAGgtaaagtcaggttgttctgatgttctttactttgctttgataatcactggactatcttgcatgatgactgttttttttttttcacgaactatcacag

Basic information

species Arabidopsis thaliana
transcript AT5G35980.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G35980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 10
CCAGAAATTGGGAAAGAGTACTTCAACCATAAGAACCTTGAAGAAATTGTTAAAAGCTATCCGTACAAGATAAATCTACCTGAGGACGATGTAGTCAAAGgtaaagt--caggttgttctgatgttctttactttgctttgataatcactggacta--tcttgcatgatgactgttttttttttttcacgaactatcacag--------------------------
||   |||||| |||||||| ||||  |||||||||||||||| |||||||| || ||| || ||||  |  ||  |  ||||||| ||| | ||||||||| |  |  || ||| ||||  | |  |   |         | | | | |  |  |  | ||||   ||   |   | || |  ||||   | | |   |                           
CCGTCAATTGGAAAAGAGTATTTCATTCATAAGAACCTTGAAGCAATTGTTACAAACTACCCTTACAGAAAGAACTTGGCTGAGGAAGATATTGTCAAAGgttaccttccatgttcttctcttatcataagcagcagcagaagactgaattaatcagtttttgctgaatattttgatcttatcattcaaagaatttactaatgattcctatcgtgaacatgtgacag