Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTAGAAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGTATATTGTCTGGATGTGACTATTGTGACAGCATCCGAGgtatctagatatagatcaatattgtgttattttctctgtgaattgtagaacgcaagttagaaactaatatgtattttgtgaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G26680.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26680.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 5'ss of exon 11
ATTTTAGAAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGTATATTGTCTGGATGTGACTATTGTGACAGCATCCGAGgtatctagatatagatcaatattgtgt-tattttctctgtgaattgtagaacgc--aagttagaaacta---atatgtattttgtgaaacag---------------------
 |||| || |||||| |||| || ||||| || ||||| |||||||| ||  | |||||||||||||||||||| |||||   |||||| |     |       | |  ||  || | |  || | |||| | |   ||   | ||     | |   | |  | ||||   || ||                      
GTTTTGGAGGAGCTTGAACTCACTATGGACCAATTCATTGACTTGTGCATCCTATCTGGATGTGACTATTGTGATAGCATTAAAGgtatttttgctttccctcttctcatgagtagtattcctataaattcttgcttgcttgaatttctgtccatgcaaactttttttcctaaccaactatgtgtgcttgtccgctag

upper sequence: AT5G26680.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G121262_T01 (Zea mays), 5'ss of exon 12
ATTTTAGAAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGTATATTGTCTGGATGTGACTATTGTGACAGCATCCGAGgtatctagatatagatcaatattgtgttattttc------tctgtgaattgtagaacg------caagttagaaacta-atatgtat-tttgtgaaacag
 |||| || |||||| |||| |||||||| |||||||| || ||||| ||  ||| |||||||||||||||||| ||||||  |||||||   |   || || ||||  | ||||  ||      | | || ||| |  | ||      ||  || | ||||   | | | |  ||||  |  ||
GTTTTGGAGGAGCTTGAACTCACCATGGACCAGTTCATTGATTTGTGCATCCTGTGTGGATGTGACTATTGTGATAGCATCAAAGgtatcctaa-gcagttctatatcattttatactccacaattgtctgcatttttaatcgtgcctccatttttgtaactccgtgtctttgcttgttcattag

upper sequence: AT5G26680.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 11
ATTTTAGAAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGTATATTGTCTGGATGTGACTATTGTGACAGCATCCGAGgtatctagat-atagatc------------aatat---tgtgttattttctctgtg-aattgtagaacgcaagttagaaactaatatgtattttgtgaaacag
||||| || |||||  | |||||||||||||| ||||| ||| |||| ||  | || || ||||| |||||||||||||| ||||||||  | || | ||||             |||     | |||| |||||  | || |  | |  |    | | ||  |      ||| || ||||   |   
ATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtattaatatcaaagattcttggtctatcaaatgcatatatgtttttttccatatgtagatattcagaaaatgataagactatccatgcatcttgtagta---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164044833|gb|ES162494.1|ES162494
EST:     CGACTTGTGTATATTGTCTGGATGTGACTATTGTGACAGCATCCGAG                         GTATCGGAGGGCAGACTGCCCTAAAGCTCATTCGCCAGCATGG
genomic: CGACTTGTGTATATTGTCTGGATGTGACTATTGTGACAGCATCCGAGgtatctagat ... tgtgaaacagGTATCGGAGGGCAGACTGCCCTAAAGCTCATTCGCCAGCATGG