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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAAGCAGCTGCCATTGCTTTCGAGGCTATTCCACGTACCCTGGCTCAAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGgtactgtcctgtactaatgaaccccaactgccatctcttgcccgttgtttaagtatataccaactcttttctcaatgcttcaattgtcggttttggtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G26360.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125271024|gb|EL285109.1|EL285109
EST:     AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAG                         CATGACAAATGGTGAAAACGCATGGACTGGTATT
genomic: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATG-CAAATGGTGAAAACGCATGGACTGGTATT
EST: gi|125320116|gb|EL334201.1|EL334201
EST:     AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAG                         CATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACA
genomic: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACA
EST: gi|164038953|gb|ES128096.1|ES128096
EST:     CTATGACTGCATTGCAAGGGAAG                         CATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCA
genomic: CTATGACTGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCA
EST: gi|86059716|gb|DR355473.1|DR355473
EST:     TGCATTGCAAGGGAAG                         CATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCA
genomic: TGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCA
EST: gi|124802895|gb|EH891450.1|EH891450
EST:     AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAG                         CATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTG
genomic: AAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGgtactgtcct ... tttggtgcagCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTG