1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATTACAACCGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgctactcttctttagttgttctttatccatatcaatataacatatttatgatcagtcaatcattcaaaacgttcttgtttctagggag
species | Arabidopsis thaliana |
transcript | AT5G25980.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116439047|gb|EG481639.1|EG481639
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446293|gb|EG488885.1|EG488885
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446293|gb|EG488885.1|EG488885
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446426|gb|EG489018.1|EG489018
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446426|gb|EG489018.1|EG489018
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|124911914|gb|EH985994.1|EH985994
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|124911914|gb|EH985994.1|EH985994
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|47827929|gb|CK117613.1|CK117613
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|47827929|gb|CK117613.1|CK117613
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116439131|gb|EG481723.1|EG481723
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATTTATGTTTTTTCCGCAAGGCCATCAAG-GA GEST: gi|116439131|gb|EG481723.1|EG481723
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATTTATGTTTTTTCCGCAAGGCCATCAAG-GA GEST: gi|116446271|gb|EG488863.1|EG488863
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446271|gb|EG488863.1|EG488863
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446304|gb|EG488896.1|EG488896
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446304|gb|EG488896.1|EG488896
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446282|gb|EG488874.1|EG488874
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446282|gb|EG488874.1|EG488874
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCACCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|124905911|gb|EH979991.1|EH979991
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|124905911|gb|EH979991.1|EH979991
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|125250547|gb|EL264632.1|EL264632
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTTCTCCGCAAGGCCATCAAG-GA GEST: gi|125250547|gb|EL264632.1|EL264632
genomic: TTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446415|gb|EG489007.1|EG489007
genomic: TTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116446415|gb|EG489007.1|EG489007
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116444210|gb|EG486802.1|EG486802
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA GEST: gi|116444210|gb|EG486802.1|EG486802
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
EST: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAG-GA G
genomic: TTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgcta ... ttctagggag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATTACAACCGGATTGATTATCTCTGCAGTCATCTATGTTTTCTCCGCAAGGCCATCAAGTGAgtggatgctactcttctttagttgttctttatccatatcaatataacatatttatgatcagtcaatcattcaaaacgttcttgtttctagggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG