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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGCTGTGCAGCTTCTGTCTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGgtagatttacttgtgaaatcttagaacaataaaacaaatgtaaaatatgtggatgttatgttattaatccttcatcttaaattttgacag

Basic information

species Arabidopsis thaliana
transcript AT5G22330.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22330.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G02170.1 (Glycine max), 5'ss of exon 11
GCACGCTGTGCAGCTTCTGTCTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGgtagattt--acttgtgaaatcttagaacaataa----aacaaatgtaaaatatgtggatgttatg---ttattaatccttcatcttaaattttgacag
||| || || |||||  | || |||||||||||||| || |||||||||||||| ||||| || |||||||||  | |  | |||    || | |     ||||    ||  |||||    ||||||  | |  |    | | | |    | ||  | || ||| | ||
GCATGCAGTTCAGCTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatgaaattggaccatttgatgttcataacttgaaataatgtttgctatgtgcttatcctcaactcaatgagttattattgtgaaattt-atag

upper sequence: AT5G22330.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 11
GCACGCTGTGCAGCTTCTGTCTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGgtagatttacttgtgaaatcttaga------acaataaaacaaatgtaaaatatgtggatgttatg---ttattaatccttcatcttaaattttgacag
||| || || || ||  | || |||||||||||||| || |||||||||||||| ||||| || |||||||||  | |     || |   || ||       || |  || ||||||  | ||||||  | |  |    | | | |  | | ||  | || ||| | ||
GCATGCAGTTCAACTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatgaaattggaccatttgatgttcagcatttgaaaaaatgtttactatgtgcttatcctcaactcaatgagtcattattgtgaaattt-atag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163986807|gb|ES111817.1|ES111817
EST:     TGGCCGTGACAATATTTGCAAG                         GCTGATATAGAGGAAGTAACATCACTCTACTTGGATGCTAAATCTTCAGCA
genomic: TGGCCGTGACAATATTTGCAAGgtagatttac ... attttgacagGCTGATATAGAGGAAGTAACATCACTCTACTTGGATGCTAAATCTTCAGCA
EST: gi|164026239|gb|ES169024.1|ES169024
EST:     TGGCCGTGACAATATTTGCAAG                         GCTGATATAGAGGAAGTAACATCACTCTACTTGGATGCTAAATCTTCAGCA
genomic: TGGCCGTGACAATATTTGCAAGgtagatttac ... attttgacagGCTGATATAGAGGAAGTAACATCACTCTACTTGGATGCTAAATCTTCAGCA
EST: gi|116443984|gb|EG486576.1|EG486576
EST:     CTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAG                         GCTGATATAGAGGAAGTAACATCACTCTACTTGGACGCTAAATCTTCAGCA
genomic: CTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGgtagatttac ... attttgacagGCTGATATAGAGGAAGTAACATCACTCTACTTGGATGCTAAATCTTCAGCA