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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCATCATCCACGTTGTAGCTCTCGTATACTACATCAAAGGCATTCTTTCTCCCAAAATGTTCAAAGTTGCTGTGACACTTGTTGTGTCTATCGGCATgtacgctttcttatactgtttctctctacatgtctacaattaccacaccttgataagaggagtttatctgcttcttatccaacttcacaaagctagtacagatgggataacctctagattttctggattatgcatcattgggtaaaatgtttatctatgctcgtttattctttacag

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 11
TTATCATCATCCACGTTGTAGCTCTCGTATACTACATCAAAGGCATTCTTTCTCCCAAAATGTTCAAAGTTGCTGTGACACTTGTTGTGTCTATCGGCATgtacgctttcttatactgtttctctctacatgtctacaattaccacaccttgata--agaggagtttatctgcttcttat-ccaacttcacaaagctagtacagatgggataacctctagattttctggattatgcatcattgggtaaaatgtttatctatgctcgtttattctttacag
| || |||||||| || || ||||| ||  |||| |||||||| |||||||| || |||||||||||||| |||||| |||| ||||| ||| | ||| |||  |  |   | |  |     | | |   | |  | ||  |   ||  | ||||  | |  |||   | ||||| |  |    | ||  ||                                                                                        
TCATTATCATCCATGTAGTGGCTCTTGTGCACTATATCAAAGGAATTCTTTCACCAAAAATGTTCAAAGTAGCTGTGGCACTAGTTGTTTCTGTTGGCCTgtgggtgtctctttgattagcttatttgactattcaaaac-attgcaagtagatattaaactagtacctgtgcttttcttgtttattttgcag---------------------------------------------------------------------------------------

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 11
TTATCATCATCCACGTTGTAGCTCTCGTATACTACATCAAAGGCATTCTTTCTCCCAAAATGTTCAAAGTTGCTGTGACACTTGTTGTGTCTATCGGCATgtacgctttcttatactgtttctctctacatgtctacaattaccacaccttgata--agaggagtttatctgcttcttat-ccaacttcacaaagctagtacagatgggataacctctagattttctggattatgcatcattgggtaaaatgtttatctatgctcgtttattctttacag
| || |||||||| || || ||||| ||  |||| |||||||| |||||||| || |||||||||||||| |||||| |||| ||||| ||| | ||| |||  |  | | | |  |     | | |   | |  | ||  |   ||  | ||||  | |  ||| | | ||||| |  |    ||||  ||                                                                                        
TCATTATCATCCATGTAGTGGCTCTTGTGCACTATATCAAAGGAATTCTTTCACCAAAAATGTTCAAAGTAGCTGTGGCACTAGTTGTTTCTGTTGGCCTgtgagtgtccctttgattggcttatttgactattcaaaac-attgcaggtagatattaaactagtatgtgtgcttttcttgtttactttgcag---------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125249321|gb|EL263406.1|EL263406
EST:     ACACTTGTTGTGTCTATCGGCAT                         GGTTGTGTGTTTCATAGTTGTGGCAATTCTTGTGGCATTGGTGGCTTCAAG
genomic: ACACTTGTTGTGTCTATCGGCATgtacgctttc ... ttctttacagGGTTGTGTGTTTCATAGTTGTGGCAATTCTTGTGGCATTGGTGGCTTCAAG