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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAAAACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGgtatacatatgcttcattattcagttttagtttttggaatcactgagatacaagtgacgctcagtttctttaactaacacatatttgttacattattcag

Basic information

species Arabidopsis thaliana
transcript AT5G16780.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16780.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G34600.1 (Glycine max), 5'ss of exon 11
AAAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAAAACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGgtatacatatgcttcattattcagttttagtttttggaatcactgagatacaagtgacgctcagtttctttaactaacacatatttgt-tacattattcag--
| | |||||| |||||||| | ||||||| | |||||||| |||||||||||||  ||| | || || || ||||| || ||||| ||||| ||||||||||||   | |   |  |||   | |  || ||  || | |   | |  || ||        ||  |  |  ||  |  |  ||   |  | ||| |||     
AGAGCTCAGATACACCATCACTGTCTGTTGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCATATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgattttaact--ttacagactaataattcctgaagtt-ttaatttaaaaactgtttacatgtaataaaatgagaaactaggagcatgcatcatttcatt

upper sequence: AT5G16780.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G24660.1 (Glycine max), 5'ss of exon 11
AAAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAAAACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGgtatacatatgcttcattattcagttttagtttttggaatcactgagatacaagtgacgctcagtttctttaactaacacata-tttgttacat-tattcag--
| | |||||| |||||||| | ||||||  | |||||||| |||||||||||||  ||| | || || || ||||| || ||||| ||||| ||||||||||||   | |      |  |  ||||||| |||    ||    | | |||     || |    || |  |  | |      || ||     ||   |  ||   
AGAGCTCAGATACACCATCACTGTCTGTGGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgattttaacaattcctgaagttttaattta-aaaactgtttacatattgtagaagt---gtctactggaattgtgtgtagttcagcgcacacacacacac

upper sequence: AT5G16780.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 11
AAAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAAAACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGgtatacat-----atgcttcattattcagttttagtttttggaatcactgagatacaagtgacgctcagtttctttaactaacacatatttgttacattattcag
| || |||||||| ||||| ||||||||| |  | ||||| |||||||||||||  ||||| || || || ||||| || ||||| ||||| |||||||||||| | |     |  ||||||  |||| ||||   | ||    |       ||  ||||| |    |  |  ||  |   |   | |   |||   |       
AGAATTCAGACACCCCATCACAGTCTGTTGAGCGGATGAGGGAAGCTCAAGCTCGGTTGAAGACACCCTATCTTGTTCTTAGTGGGCATGTTAAACCAGGgtatgctttttgaacccttcatgcttcatttttttatatttatttatgattcatcaaagtggcatgaaagtggttcgagagaaggaaaaaagttttctgg-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124845456|gb|EH929893.1|EH929893
EST:     CATGTCAAACCAGG                         ACAAACCAGTGATCCTCAGAGTGGGTTTGCGACTGTTGAGAAGGATGTTCC
genomic: CATGTCAAACCAGGgtatacatat ... cattattcagACAAACCAGTGATCCTCAGAGTGGGTTTGCGACTGTTGAGAAGGATGTTCC