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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCATGCCTTACGACAACAGTTGATCTTTTAAATCAGTTGCCCGATACAGCCATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAGgcacgtatctctgccccctgcctctctcacttaataactaatattttctgaccttctaaaactatgttggttcag

Basic information

species Arabidopsis thaliana
transcript AT5G14260.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081117|gb|DR376874.1|DR376874
EST:     AGCCATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAG                         GTTCGTGTTGTAGCTGCAATTTGTGGGACATGGCAGGAGTAATTTTTGGTC
genomic: AGCCATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAGgcacgtatct ... gttggttcagGTTCGTGTTGTAGCTGCAATTTGTGGGACATGGCAGGAGTAATTTTTGGTC
EST: gi|124925926|gb|EL003848.1|EL003848
EST:     ATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAG                         GTTCGTGTTGTAGCTGCAATTTGTGGGACATGGTCAGGAGTTAATTTTTGG
genomic: ATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAGgcacgtatct ... gttggttcagGTTCGTGTTGTAGCTGCAATTTGTGGGACATGG-CAGGAGT-AATTTTTGG
EST: gi|124794154|gb|EH883833.1|EH883833
EST:     AGCCATCNCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAG                         GTTCGTGTTGTAGCT
genomic: AGCCATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAGgcacgtatct ... gttggttcagGTTCGTGTTGTAGCT
EST: gi|86078005|gb|DR373762.1|DR373762
EST:     AGCCATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAG                         GTTCGTGTTGTAGCTGCAATTTGTGGGACATGGCAGGAGTAATTTTTGGTC
genomic: AGCCATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAGgcacgtatct ... gttggttcagGTTCGTGTTGTAGCTGCAATTTGTGGGACATGGCAGGAGTAATTTTTGGTC
EST: gi|125232044|gb|EL246129.1|EL246129
EST:     CCATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAG                         GTTCGTGTTGTAGCTGACAATTTGTGGGACATGGCAGGAGTAATT
genomic: CCATCTCTCCATGCCCAGCACCATATGCTCCTTCCTTGAAATAAAAAGgcacgtatct ... gttggttcagGTTCGTGTTGTAGCTG-CAATTTGTGGGACATGGCAGGAGTAATT