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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGTTCACAGTTAATGTCGTGAGAAACCTTACTCAGAAAACTCATTGGCGTATTAAAACTCACCTAGCAATCAGTCACTTGGATGTCAACAAAATAAATgtgagttttctaattcccatatggtcgttaactctttatacaagttaaggtccaatcatggagtttttttagctgatccttgtttggaacttcctcaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G10490.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10490.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA09G33170.1 (Glycine max), 5'ss of exon 11
TAAGTTCACAGTTAATGTCGTGAGAAACCTTACTCAGAAAACTCATTGGCGTATTAAAACTCACCTAGCAATCAGTCACTTGGATGTCAACAAAATAAATgtgag---ttttctaattcccatatggtcgttaactctttatacaagttaag-gtccaatcatggagtttttttagctgatcc---ttgtttggaacttcctcaaacag
 || || ||||| ||||| ||| | ||||||| ||| ||||| ||||||||||| ||||| || ||||| || ||||| |||||||| || || || ||||| ||      | | |||    ||| ||   |   | || |   |  || ||  |  ||| ||    ||   |  | ||   |   | ||||    ||||  ||     
CAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGTATCAAAACCCATCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATgtaagaaacagttttattgtt-tatagttaattgtttttcaccaacattgagcatttaatgataattttccctgtgatgtgacaaatggtttaatgcttctgcag----

upper sequence: AT5G10490.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv00s0313g00020.t01 (Vitis vinifera), 5'ss of exon 11
TAAGTTCACAGTTAATGTCGTGAGAAACCTTACTCAGAAAACTCATTGGCGTATTAAAACTCACCTAGCAATCAGTCACTTGGATGTCAACAAAATAAATgtgagtttt----ctaattcccatatggtcgttaactctttatacaa-----gttaa--ggtccaatcatggagttttttt------agctga---tccttgtttggaacttcctcaaacag-----------------------
 |||||||| || ||||| |||||||| || | ||| || |||||||||||||||||||| ||| | ||||| |||||||||||||| || || || ||||| ||  ||       |||| | | | |    ||| |  | ||   |     |||||  |         | || | | | |      || ||     |  || |      ||  | ||| ||                       
CAAGTTCACTGTGAATGTTGTGAGAAATCTCAGTCAAAAGACTCATTGGCGTATTAAAACCCACTTGGCAATTAGTCACTTGGATGTTAATAAGATCAATgtaaggattaatctggattctcttcttggaaataaattatcatgttacctttgttaacagagattgctctagaatctgtgtcaaaatagttgggtgcctctgatctttctttgttaaaatagttggctgcctcttttctttgcag