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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATATCGGCAAAGGATGCTCTTGATGCCGAGTACTTTTGGACTGATCCGTTGCCATGTGACCCAAAGAGgtatttgtatattctgattttctctgacaaagttcatgaaactcatctggtgcatcatcatctagcttattagacaggcgatcgtggggaattttttctgactaaattaaggtttcatttcaacag

Basic information

species Arabidopsis thaliana
transcript AT5G10270.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10270.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os01g72790.1 (Oryza sativa), 5'ss of exon 11
AGAATATCGGCAAAGGATGCTCTTGATGCCGAGTACTTTTGGACTGATCCGTTGCCATGTGACCCAAAGAGgtatttgtatattctgattttctctgacaaagttcatgaaactcatctggtgcatcatcatctagcttattagacaggcgatcgtggggaattttttctgactaaattaaggtttcatttcaacag
|| ||||||||||| ||||| ||||| || ||||| || ||||||||||| || || ||||| |||||||||||     ||||  || ||   | || ||   | |    ||||    |  | | | || |  | || | | | ||||                                                 
AGGATATCGGCAAAAGATGCACTTGACGCGGAGTATTTCTGGACTGATCCCTTACCGTGTGATCCAAAGAGgtac----atatgatggttaaatttgtcacgctgct---aactagcttaattc-taataactttgcatctgatacag-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124992387|gb|EL064656.1|EL064656
EST:     ACTTTTGGACTGATCCGTTGCCATGTGACCCAAAGAG                         TCTGCCCACATATGAATCATCACATGAGTTC
genomic: ACTTTTGGACTGATCCGTTGCCATGTGACCCAAAGAGgtatttgtat ... atttcaacagTCTGCCCACATATGAATCATCACATGAGTTC
EST: gi|164130612|gb|ES053656.1|ES053656
EST:     CTTGATGCCGAGTACTTTTGG-CTGATCCGTTGCCATGTGACCCAAAGAG                         TCTGCCCACATA
genomic: CTTGATGCCGAGTACTTTTGGACTGATCCGTTGCCATGTGACCCAAAGAGgtatttgtat ... atttcaacagTCTGCCCACATA